Hansen Cluster OS upgrade
During the maintenance scheduled for May 19-20 the Hansen cluster will be upgraded to Red Hat Enterprise Linux, version 6.
Only those PBS jobs with walltimes short enough that they will finish prior to the beginning of this maintenance period are being scheduled for execution -- jobs with longer walltimes will be held in the input queue until the operating system upgrade has been completed.
| Package | Red Hat 5 version | New Package Name | New Red Hat 6 Version |
|---|---|---|---|
| autodesk | 2011, 2012 | 2013 | |
| boost | 1.39.0, 1.47.0 | 1.49.0 | |
| boost | 1.49.0_intel-12.1 | 1.49.0_intel-13.1.1.163 | |
| cgal | 3.6 | 3.9 | |
| comsol | 3.5a | 4.3b | |
| eman2 | current | eman | 2.07 |
| fftw | 3.3.1_intel-12.1_openmpi-1.4.4 | 3.3.3_intel-13.1.1.163_openmpi-1.6.3 | |
| fluent | 13 | ansys | 14 |
| fluent | 6.3.26 | ansys | 14 |
| gcc | 4.1.2, 4.4.0, 4.5.1 | 4.7.2 | |
| gdal | 1.8.0, 1.8.1 | 1.10.0 | |
| geos | 3.3.1 | 3.3.2 | |
| gmt | 4.5.6-gcc4 | 4.5.9 | |
| gmp | 5.0.1 | 5.1.3 | |
| gromacs | 4.5.5_openmpi-1.6 | 4.6.1_openmpi-1.6.3_gcc-4.7.2 | |
| gsl | 1.14 | 1.15 | |
| hdf5 | 1.8.5_gcc-4.5.1 | 1.8.7_gcc-4.7.2 | |
| impi | 4.0.3.008_intel-12.1 | 4.1.1.036 | |
| lammps | 28Oct12, 4Jul12 | 29Jul13 | |
| mpfr | 2.4.1 | 3.1.0 | |
| mpfr | 3.0.0 | 3.1.0 | |
| mpich2 | 1.4_intel-12.0.084 | 1.4.1p1_intel-13.1.1.163 | |
| mpich2 | 1.4.1p1_intel-12.0.084 | 1.4.1p1_intel-13.1.1.163 | |
| mpich2 | 1.4.1p1_intel-12.1 | 1.4.1p1_intel-13.1.1.163 | |
| mpich2 | 1.4.1p1_intel-13.0.117 | 1.4.1p1_intel-13.1.1.163 | |
| mvapich2 | 1.8_gcc-4.5.1 | 1.9_gcc-4.7.2 | |
| mvapich2 | 1.8_intel-12.0.084 | 1.9_intel-13.1.1.163 | |
| mvapich2 | 1.8_intel-12.1 | 1.9_intel-13.1.1.163 | |
| mvapich2 | 1.8_intel-13.0.1.117 | 1.9_intel-13.1.1.163 | |
| nco | 3.9.2 | 4.2.3 | |
| nco | 4.0.8 | 4.2.3 | |
| ncview | 1.93g | 2.1.2 | |
| netcdf | 3.6.3_gcc-4.5.1 | 3.6.3_gcc-4.7.2 | |
| netcdf | 4.0.1_gcc-4.5.1 | 4.1.1_gcc-4.7.2 | |
| netcdf | 4.0.1_intel-12.0.084 | 4.1.1_13.1.1.163 | |
| netcdf | 4.1.3_gcc-4.5.1 | 4.1.1_gcc-4.7.2 | |
| nwchem | 6.1_intel-10.1.025_mpich2-1.4.1p1 | 6.3-src.2013-05-28 | |
| openmpi | 1.4.4_gcc-4.4.0 | 1.6.3_gcc-4.7.2 | |
| openmpi | 1.4.4_intel-12.1 | 1.6.3_intel-13.1.1.163 | |
| openmpi | 1.6.3_gcc-4.5.1 | 1.6.3_gcc-4.7.2 | |
| protobuf | 2.4.1 | 2.5.0 | |
| python | 2.7.3_intel-12.1 | 2.7.5_intel-13.1.1.163 | |
| valgrind | 3.7.0 | 3.8.1 | |
| xcrysden | 1.4.1 | 1.5.53 |
To prepare your applications and workflow for the upgrade, a test queue will be available soon.