lastz
Link to section 'Introduction' of 'lastz' Introduction
LASTZ - pairwise DNA sequence aligner
BioContainers: https://biocontainers.pro/tools/lastz
Home page: https://github.com/lastz/lastz
Link to section 'Versions' of 'lastz' Versions
- 1.04.15
Link to section 'Commands' of 'lastz' Commands
- lastz
- lastz_32
- lastz_D
Link to section 'Module' of 'lastz' Module
You can load the modules by:
module load biocontainers
module load lastz
Link to section 'Example job' of 'lastz' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run lastz on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=lastz
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers lastz
lastz cmc_CFBP8216.fasta cmp_LPPA982.fasta \
--notransition --step=20 --nogapped \
--format=maf > cmc_vs_cmp.maf