easysfs
Link to section 'Introduction' of 'easysfs' Introduction
easySFS is a tool for the effective selection of population size projection for construction of the site frequency spectrum.
For more information, please check its home page on Github.
Link to section 'Versions' of 'easysfs' Versions
- 1.0
Link to section 'Commands' of 'easysfs' Commands
- easySFS.py
Link to section 'Module' of 'easysfs' Module
You can load the modules by:
module load biocontainers
module load easysfs
Link to section 'Example job' of 'easysfs' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run easySFS on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=easysfs
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers easysfs
easySFS.py -i example_files/wcs_1200.vcf -p example_files/wcs_pops.txt --preview -a
easySFS.py -i example_files/wcs_1200.vcf -p example_files/wcs_pops.txt -a --proj=7,7