wiggletools
Link to section 'Introduction' of 'wiggletools' Introduction
The WiggleTools package allows genomewide data files to be manipulated as numerical functions, equipped with all the standard functional analysis operators (sum, product, product by a scalar, comparators), and derived statistics (mean, median, variance, stddev, t-test, Wilcoxon's rank sum test, etc).
Docker hub: https://hub.docker.com/r/ensemblorg/wiggletools
Home page: https://github.com/Ensembl/WiggleTools
Link to section 'Versions' of 'wiggletools' Versions
- 1.2.11
Link to section 'Commands' of 'wiggletools' Commands
- wiggletools
Link to section 'Module' of 'wiggletools' Module
You can load the modules by:
module load biocontainers
module load wiggletools
Link to section 'Example job' of 'wiggletools' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run wiggletools on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=wiggletools
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers wiggletools
wiggletools test/fixedStep.wig
wiggletools test/fixedStep.bw
wiggletools test/bedfile.bg
wiggletools test/overlapping.bed
wiggletools test/bam.bam
wiggletools test/cram.cram
wiggletools test/vcf.vcf
wiggletools test/bcf.bcf