Software: Another Bisulfite Mapping Algorithm (abismal)
Description
Another Bisulfite Mapping Algorithm (abismal) is a read mapping program for bisulfite sequencing in DNA methylation studies.
Available Versions
Unspecified: | 3.0.0 |
---|
BioContainers: https://biocontainers.pro/tools/abismal
Home page: https://github.com/smithlabcode/abismal
Versions
- 3.0.0
Commands
- abismal
- abismalidx
- simreads
Module
You can load the modules by:
module load biocontainers
module load abismal
Example job
Using
#!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bash
instead.
To run abismal on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=abismal
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers abismal
abismalidx ~/.local/share/genomes/hg38/hg38.fa hg38