Software: AGFusion
Description
AGFusion (pronounced 'A G Fusion') is a python package for annotating gene fusions from the human or mouse genomes.
Available Versions
Unspecified: | 1.3.11 |
---|
Docker hub: https://hub.docker.com/r/mgibio/agfusion
Home page: https://github.com/murphycj/AGFusion
Versions
- 1.3.11
Commands
- agfusion
Module
You can load the modules by:
module load biocontainers
module load agfusion
Example job
Using
#!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bash
instead.
To run agfusion on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=agfusion
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers agfusion