Rosen Center for Advanced Computing
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Software: Alien-hunter

Description

Alien-hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs).

Available Versions

Unspecified: 1.7.7

For more information, please check its website: https://biocontainers.pro/tools/alien-hunter and its home page: https://www.sanger.ac.uk/tool/alien-hunter/.

Commands

  • alien_hunter

Module

You can load the modules by:

module load biocontainers
module load alien_hunter

Example job

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Alien_hunter on our our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name 
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=alien_hunter
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers alien_hunter
 
alien_hunter genome.fasta output