Software: Bamliquidator
Description
Bamliquidator is a set of tools for analyzing the density of short DNA sequence read alignments in the BAM file format.
Available Versions
| Unspecified: | 1.5.2 |
|---|
Docker hub: https://hub.docker.com/r/bioliquidator/bamliquidator/ and its home page on Github.
Commands
- bamliquidator
- bamliquidator_bins
- bamliquidator_regions
- bamliquidatorbatch
Module
You can load the modules by:
module load biocontainers
module load bamliquidator
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run Bamliquidator on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=bamliquidator
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers bamliquidator