Software: BEAST 2
Description
BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences.
Available Versions
Unspecified: | 2.6.3 2.6.4 2.6.6 |
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For more information, please check its website: https://biocontainers.pro/tools/beast2 and its home page: https://www.beast2.org.
Commands
- applauncher
- beast
- beauti
- densitree
- loganalyser
- logcombiner
- packagemanager
- treeannotator
Module
You can load the modules by:
module load biocontainers
module load beast2
Example job
Using
#!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bash
instead.
To run BEAST 2 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 4
#SBATCH --job-name=beast2
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers beast2
beast -threads 4 -prefix input input.xml