Software: Bioconvert
Description
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Available Versions
| Unspecified: | 0.4.3 0.5.2 0.6.1 0.6.2 |
|---|
For more information, please check its website: https://biocontainers.pro/tools/bioconvert and its home page: https://bioconvert.readthedocs.io/en/master/.
Commands
- bioconvert
Module
You can load the modules by:
module load biocontainers
module load bioconvert
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run Bioconvert on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=bioconvert
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers bioconvert
bioconvert fastq2fasta input.fastq output.fa