Software: Exonerate
Description
Exonerate is a generic tool for pairwise sequence comparison/alignment.
Available Versions
Unspecified: | 2.4.0 |
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For more information, please check its home page: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate.
Commands
- exonerate
Module
You can load the modules by:
module load biocontainers
module load exonerate
Example job
Using
#!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bash
instead.
To run Exonerate on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=exonerate
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers exonerate
exonerate -m genome2genome cms.fasta cmm.fasta > cm_vs_cs.out