Software: Expansion Hunter
Description
Expansion Hunter: a tool for estimating repeat sizes.
Available Versions
Unspecified: | 4.0.2 |
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BioContainers: https://biocontainers.pro/tools/expansionhunter
Home page: https://github.com/Illumina/ExpansionHunter
Commands
- ExpansionHunter
Module
You can load the modules by:
module load biocontainers
module load expansionhunter
Example job
Using
#!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bash
instead.
To run expansionhunter on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=expansionhunter
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers expansionhunter