Purdue University

Commands

• fasta36
• fastf36
• fastm36
• fasts36
• fastx36
• fasty36
• ggsearch36
• glsearch36
• lalign36
• ssearch36
• tfastf36
• tfastm36
• tfasts36
• tfastx36
• tfasty36

Module

You can load the modules by:

module load biocontainers
module load fasta3

Example job

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Fasta3 on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name 
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=fasta3
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers fasta3

fasta36 input.fasta genome.fasta