Software: Genomedata
Description
Genomedata is a format for efficient storage of multiple tracks of numeric data anchored to a genome. The format allows fast random access to hundreds of gigabytes of data, while retaining a small disk space footprint.
Available Versions
| Unspecified: | 1.5.0 |
|---|
BioContainers: https://biocontainers.pro/tools/genomedata
Home page: http://pmgenomics.ca/hoffmanlab/proj/genomedata/
Commands
- python
- python3
- genomeCoverageBed
- genomedata-close-data
- genomedata-erase-data
- genomedata-hardmask
- genomedata-histogram
- genomedata-info
- genomedata-load
- genomedata-load-assembly
- genomedata-load-data
- genomedata-load-seq
- genomedata-open-data
- genomedata-query
- genomedata-report
Module
You can load the modules by:
module load biocontainers
module load genomedata
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run genomedata on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=genomedata
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers genomedata