Software: Hifiasm
Description
Hifiasm is a fast haplotype-resolved de novo assembler for PacBio HiFi reads.
Available Versions
Unspecified: | 0.16.0 0.18.5 |
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For more information, please check its website: https://biocontainers.pro/tools/hifiasm and its home page on Github.
Commands
- hifiasm
Module
You can load the modules by:
module load biocontainers
module load hifiasm
Example job
Using
#!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bash
instead.
To run Hifiasm on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=hifiasm
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers hifiasm