Software: IGV (Integrative Genomics Viewer)
Description
IGV (Integrative Genomics Viewer) is a high-performance, easy-to-use, interactive tool for the visual exploration of genomic data.
Available Versions
| Unspecified: | 2.11.9 2.12.3 |
|---|
For more information, please check its home page: http://www.broadinstitute.org/software/igv/home.
Commands
- igv_hidpi.sh
- igv.sh
Module
You can load the modules by:
module load biocontainers
module load igv
Interactive job
Since IGV requires GUI, it is recommended to run it within ThinLinc:
(base) UserID@bell-fe00:~ $ sinteractive -N1 -n12 -t4:00:00 -A myallocation
salloc: Granted job allocation 12345869
salloc: Waiting for resource configuration
salloc: Nodes bell-a008 are ready for job
(base) UserID@bell-a008:~ $ module --force purge
(base) UserID@bell-a008:~ $ ml biocontainers igv
(base) UserID@bell-a008:~ $ igv.sh