Purdue University

Commands

• einsi
• fftns
• fftnsi
• ginsi
• linsi
• mafft
• mafft-distance
• mafft-einsi
• mafft-fftns
• mafft-fftnsi
• mafft-ginsi
• mafft-homologs.rb
• mafft-linsi
• mafft-nwns
• mafft-nwnsi
• mafft-profile
• mafft-qinsi
• mafft-sparsecore.rb
• mafft-xinsi
• nwns
• nwnsi

Module

You can load the modules by:

module load biocontainers
module load mafft

Example job

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run MAFFT on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name 
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mafft
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers mafft