Software: mapDamage2
Description
mapDamage2 is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.
Available Versions
| Unspecified: | 2.2.1 |
|---|
BioContainers: https://biocontainers.pro/tools/mapdamage2
Home page: http://ginolhac.github.io/mapDamage/
Commands
- mapDamage
Module
You can load the modules by:
module load biocontainers
module load mapdamage2
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run mapdamage2 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mapdamage2
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers mapdamage2