Purdue University

Commands

• ame
• centrimo
• dreme
• dust
• fimo
• glam2
• glam2scan
• gomo
• mast
• mcast
• meme
• meme-chip
• momo
• purge
• spamo
• tomtom

Module

You can load the modules by:

module load biocontainers
module load meme

Example job

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Meme on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name 
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=meme
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers meme

meme seq.fasta -dna -mod oops -pal

meme-chip Klf1.fna -o memechip_klf1_out