Software: Mmseqs2
Description
Mmseqs2 is a software suite to search and cluster huge protein and nucleotide sequence sets.
Available Versions
Unspecified: | 13.45111 14.7e284 |
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For more information, please check its website: https://biocontainers.pro/tools/mmseqs2 and its home page on Github.
Commands
- mmseqs
Module
You can load the modules by:
module load biocontainers
module load mmseqs2
Example job
Using
#!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bash
instead.
To run Mmseqs2 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mmseqs2
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers mmseqs2
mmseqs createdb examples/DB.fasta targetDB
mmseqs createtaxdb targetDB tmp
mmseqs createindex targetDB tmp
mmseqs easy-taxonomy examples/QUERY.fasta targetDB alnRes tmp