Software: ModelTest-NG
Description
ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and protein alignments. ModelTest-NG supersedes jModelTest and ProtTest in one single tool, with graphical and command console interfaces.
Available Versions
| Unspecified: | 0.1.7 |
|---|
BioContainers: https://biocontainers.pro/tools/modeltest-ng
Home page: https://github.com/ddarriba/modeltest
Commands
- modeltest-ng
- modeltest-ng-mpi
Module
You can load the modules by:
module load biocontainers
module load modeltest-ng
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run modeltest-ng on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=modeltest-ng
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers modeltest-ng