Software: Multiqc
Description
Multiqc is a reporting tool that parses summary statistics from results and log files generated by other bioinformatics tools.
Available Versions
| Unspecified: | 1.11 |
|---|
For more information, please check its website: https://biocontainers.pro/tools/multiqc and its home page: https://multiqc.info.
Commands
- multiqc
Module
You can load the modules by:
module load biocontainers
module load multiqc
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run Multiqc on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=multiqc
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers multiqc
multiqc fastqc_out -o multiqc_out