Software: Muscle
Description
Muscle is a modified progressive alignment algorithm which has comparable accuracy to MAFFT, but faster performance.
Available Versions
| Unspecified: | 3.8.1551 5.1 |
|---|
For more information, please check its website: https://biocontainers.pro/tools/muscle and its home page: http://www.drive5.com/muscle/muscle_userguide3.8.html.
Commands
- muscle
Module
You can load the modules by:
module load biocontainers
module load muscle
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run Muscle on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=muscle
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers muscle
muscle -align seqs2.fasta -output seqs.afa