Software: odgi
Description
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorithms that allow the use of such graphs in bioinformatic analyses.
Available Versions
| Unspecified: | 0.8.3 |
|---|
Docker hub: https://hub.docker.com/r/pangenome/odgi
Home page: https://github.com/pangenome/odgi
Commands
- odgi
Module
You can load the modules by:
module load biocontainers
module load odgi
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run odgi on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=odgi
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers odgi