Software: Paml
Description
Paml is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.
Available Versions
| Unspecified: | 4.9 |
|---|
For more information, please check its website: https://biocontainers.pro/tools/paml and its home page: http://abacus.gene.ucl.ac.uk/software/paml.html.
Commands
- baseml
- basemlg
- chi2
- codeml
- evolver
- infinitesites
- mcmctree
- pamp
- yn00
Module
You can load the modules by:
module load biocontainers
module load paml
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run Paml on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=paml
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers paml