Software: Parliament2
Description
Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a region, Inversions of a region, or Translocations between two regions in the genome.
Available Versions
| Unspecified: | 0.1.11 |
|---|
Docker hub: https://hub.docker.com/r/dnanexus/parliament2
Home page: https://github.com/fritzsedlazeck/parliament2
Commands
- parliament2.py
Module
You can load the modules by:
module load biocontainers
module load parliament2
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run parliament2 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=parliament2
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers parliament2