Software: pixy
Description
pixy is a command-line tool for painlessly estimating average nucleotide diversity within (?) and between (dxy) populations from a VCF.
Available Versions
| Unspecified: | 1.2.7 |
|---|
Home page: https://github.com/ksamuk/pixy
Commands
- pixy
Module
You can load the modules by:
module load biocontainers
module load pixy
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run pixy on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=pixy
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers pixy