Software: Plink
Description
Plink is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
Available Versions
| Unspecified: | 1.90b6.21 |
|---|
For more information, please check its website: https://biocontainers.pro/tools/plink and its home page: https://zzz.bwh.harvard.edu/plink/.
Commands
- plink
- prettify
Module
You can load the modules by:
module load biocontainers
module load plink
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run Plink on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=plink
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers plink
plink --file toy --freq --out toy_analysis