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Software: r-CellChat

Description

CellChat: Inference and analysis of cell-cell communication.

Available Versions

Available Versions
Unspecified: 1.5.0

Home page: https://github.com/sqjin/CellChat

Commands

  • R
  • Rscript
  • rstudio

Module

You can load the modules by:

module load biocontainers
module load r-cellchat

Example job

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run r-cellchat on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=r-cellchat
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers r-cellchat