Software: RStudio
Description
RStudio is an integrated development environment (IDE) for the R statistical computation and graphics system.
Available Versions
| Unspecified: | 4.1.1 |
|---|
This is an RStudio IDE together with a plain R-base installation (see https://github.com/rocker-org/rocker/), repackaged by RCAC with an addition of a handful prerequisite libraries (libcurl, libopenssl, libxml2, libcairo2 and libXt) and their header files. It is intentionally separate from the biocontainers' 'r' module for reasons of image size (700MB vs 360MB).
Docker hub: https://hub.docker.com/_/r-base and its home page: https://www.rstudio.com/products/rstudio/ and https://www.r-project.org/.
Commands
- R
- Rscript
- rstudio
Module
You can load the modules by:
module load biocontainers
module load r-studio
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run RStudio on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=r-studio
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers r-studio