Software: Raxml-ng
Description
Raxml-ng is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.
Available Versions
Unspecified: | 1.1.0 |
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For more information, please check its website: https://biocontainers.pro/tools/raxml-ng and its home page on Github.
Commands
- raxml-ng
- raxml-ng-mpi
- mpirun
- mpiexec
Module
You can load the modules by:
module load biocontainers
module load raxml-ng
Example job
Using
#!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bash
instead.
To run Raxml-ng on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=raxml-ng
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers raxml-ng
raxml-ng --bootstrap --msa alignment.phy \
--model GTR+G --threads 12 --bs-trees 1000