Software: RELION
Description
RELION for REgularized LIkelihood OptimizatioN implements an empirical Bayesian approach for analysis of electron cryo-microscopy Cryo-EM. Specifically it provides methods of refinement of singular or multiple 3D reconstructions as well as 2D class averages. RELION is an important tool in the study of living cells.
Available Versions
| Anvil: | 2.1.b1 3.1.0 3.1.2 3.1.3 |
|---|---|
| Gilbreth: | 2.1.b1 3.0.8 3.1.0 3.1.2 3.1.3 |
| Scholar: | 2.1.b1 3.0.8 3.1.0 3.1.2 3.1.3 |
Module
You can load the modules by:
module load ngc
module load relion
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run relion on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH -c 8
#SBATCH --gpus-per-node=1
#SBATCH --job-name=relion
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml ngc relion