Software: RepeatModeler
Description
RepeatModeler is a de novo transposable element (TE) family identification and modeling package.
Available Versions
| Unspecified: | 2.0.2 2.0.3 |
|---|
For more information, please check its website: https://biocontainers.pro/tools/repeatmodeler and its home page: http://www.repeatmasker.org/RepeatModeler/.
Commands
- RepeatModeler
- BuildDatabase
- RepeatClassifier
Module
You can load the modules by:
module load biocontainers
module load repeatmodeler
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run RepeatModeler on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=repeatmodeler
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers repeatmodeler