Software: Shortstack
Description
Shortstack is a tool for comprehensive annotation and quantification of small RNA genes.
Available Versions
| Unspecified: | 3.8.5 |
|---|
For more information, please check its website: https://biocontainers.pro/tools/shortstack and its home page on Github.
Commands
- ShortStack
Module
You can load the modules by:
module load biocontainers
module load shortstack
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run Shortstack on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=shortstack
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers shortstack