Software: Slamdunk
Description
Slamdunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis.
Available Versions
| Unspecified: | 0.4.3 |
|---|
Docker hub: https://hub.docker.com/r/tobneu/slamdunk
Home page: http://t-neumann.github.io/slamdunk/
Commands
- slamdunk
- alleyoop
Module
You can load the modules by:
module load biocontainers
module load slamdunk
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run slamdunk on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=slamdunk
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers slamdunk