Software: Snp-dists
Description
Snp-dists is a tool to convert a FASTA alignment to SNP distance matrix.
Available Versions
Unspecified: | 0.8.2 |
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Docker hub: https://hub.docker.com/r/staphb/snp-dists
Home page: https://github.com/tseemann/snp-dists
Commands
- snp-dists
Module
You can load the modules by:
module load biocontainers
module load snp-dists
Example job
Using
#!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bash
instead.
To run snp-dists on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=snp-dists
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers snp-dists
snp-dists test/good.aln > distances.tab