Software: T-coffee
Description
T-coffee is a multiple sequence alignment software using a progressive approach.
Available Versions
Unspecified: | 13.45.0.4846264 |
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For more information, please check its website: https://biocontainers.pro/tools/t-coffee and its home page on Github.
Commands
- t_coffee
Module
You can load the modules by:
module load biocontainers
module load t-coffee
Example job
Using
#!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bash
instead.
To run T-coffee on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=t-coffee
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers t-coffee
t_coffee OG0002077.fa -mode expresso