Software: Talon
Description
Talon is a Python package for identifying and quantifying known and novel genes/isoforms in long-read transcriptome data sets.
Available Versions
| Unspecified: | 5.0 |
|---|
For more information, please check its website: https://biocontainers.pro/tools/talon and its home page on Github.
Commands
- talon
- talon_abundance
- talon_create_GTF
- talon_fetch_reads
- talon_filter_transcripts
- talon_generate_report
- talon_get_sjs
- talon_initialize_database
- talon_label_reads
- talon_reformat_gtf
- talon_summarize
Module
You can load the modules by:
module load biocontainers
module load talon
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run Talon on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=talon
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers talon