Software: tRAX
Description
tRAX (tRNA Analysis of eXpression) is a software package built for in-depth analyses of tRNA-derived small RNAs (tDRs), mature tRNAs, and inference of RNA modifications from high-throughput small RNA sequencing data.
Available Versions
| Unspecified: | 1.0.0 |
|---|
Docker hub: https://hub.docker.com/r/ucsclowelab/trax and its home page on Github.
Commands
- TestRun.bash
- quickdb.bash
- maketrnadb.py
- trimadapters.py
- processamples.py
Module
You can load the modules by:
module load biocontainers
module load trax
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run tRAX on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=trax
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers trax