Software: Varlociraptor
Description
Varlociraptor implements a novel, unified fully uncertainty-aware approach to genomic variant calling in arbitrary scenarios.
Available Versions
| Unspecified: | 4.11.4 |
|---|
For more information, please check its website: https://biocontainers.pro/tools/varlociraptor and its home page on Github.
Commands
- varlociraptor
Module
You can load the modules by:
module load biocontainers
module load varlociraptor
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run Varlociraptor on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=varlociraptor
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers varlociraptor
varlociraptor call variants tumor-normal --purity 0.75 --tumor