Purdue University

Dobos, E., Micheli, E., Baumgardner, M.F., Biehl, L. and Helt, T., "Use of combined digital elevation model and satellite radiometric data for regional soil mapping," Geoderma, vol. 97, no. 3-4, pp. 367-391, Jan 2000. DOI: 10.1016/S0016-7061(00)00046-X.

Biehl, L. and Landgrebe, D., "Effect of the number of samples used in a leave-one-out covariance estimator," Proceedings of SPIE - The International Society for Optical Engineering, pp. 370-374, Jan 2000.

Houstis, E.N., Catlin, A.C., Rice, J.R., Verykios, V.S., Ramakrishnan, N. and Houstis, C.E., "PYTHIA-II: A Knowledge/Database System for Managing Performance Data and Recommending Scientific Software," ACM Transactions on Mathematical Software, vol. 26, no. 2, pp. 227-253, Jan 2000. DOI: 10.1145/353474.353475.

Tomeh, M.M., Goasguen, S. and El-Ghazaly, S.M., "Time-domain optical response of an electrooptic modulator using FDTD," IEEE Transactions on Microwave Theory and Techniques, vol. 49, no. 12, pp. 2276-2281, Jan 2001. DOI: 10.1109/22.971610.

Goasguen, S., Butt, A.R., Colby, K.D. and Lundstrorn, M.S., "Parallelization of the nanoscale device simulator nanoMOS-2.0 using a 100 nodes linux cluster," Proceedings of the IEEE Conference on Nanotechnology, pp. 409-412, Jan 2002.

Aref, W.G. et al., "A distributed database server for continuous media," Proceedings - International Conference on Data Engineering, pp. 490-491, Jan 2002.

Zhu, X., Aref, W.G., Fan, J., Catlin, A.C. and Elmagarmid, A.K., "Medical video mining for efficient database indexing, management and access," Proceedings - International Conference on Data Engineering, pp. 569-580, Jan 2003.

Arns, L. and Cruz-Neira, C., "Effects of physical and virtual rotations and display device on users of an architectural walkthrough," Proceedings VRCAI 2004 - ACM SIGGRAPH International Conference on Virtual Reality Continuum and its Applications in Industry, pp. 104-111, Jan 2004.

Erickson, B.J., Johannsen, C.J., Vorst, J.J. and Biehl, L.L., "Using remote sensing to assess stand loss and defoliation in maize," Photogrammetric Engineering and Remote Sensing, vol. 70, no. 6, pp. 717-722, Jan 2004. DOI: 10.14358/PERS.70.6.717.

Arns, L.L. and Cerney, M.M., "The relationship between age and incidence of cybersickness among immersive environment users," Proceedings - IEEE Virtual Reality, pp. 267-268, Jan 2005.

Madhavan, K.P.C., Arns, L.L. and Bertoline, G.R., "A distributed rendering environment for teaching animation and scientific visualization," IEEE Computer Graphics and Applications, vol. 25, no. 5, pp. 32-38, Jan 2005.

Zhu, X., Elmagarmid, A.K., Xue, X., Wu, L. and Catlin, A.C., "InsightVideo: Toward hierarchical video content organization for efficient browsing, summarization and retrieval," IEEE Transactions on Multimedia, vol. 7, no. 4, pp. 648-666, Jan 2005. DOI: 10.1109/TMM.2005.850977.

Moreland, J., Arns, L. and Meador, W.S., "Pre-rendered stereoscopic movies for commodity display systems," Proceedings of SPIE - The International Society for Optical Engineering, pp. 216-222, Jan 2005.

Ouzzani, M., Aref, W.G., Bertino, E., Catlin, A.C., Clifton, C.W., Hon, W.-K., Elmagarmid, A.K., Ghafoor, A., Hambrusch, S.E., Prabhakar, S., Vitter, J.S. and Zhang, X., "The Indiana Center for Database Systems at Purdue University," SIGMOD Record, vol. 34, no. 2, pp. 53-58, Jan 2005. DOI: 10.1145/1083784.1083795.

Klimeck, G., Korkusinski, M., Xu, H., Lee, S., Goasguen, S. and Saied, F., "Building and deploying community nanotechnology software tools on nanoHUB.org - Atomistic simulations of multimillion-atom quantum dot nanostructures," 2005 5th IEEE Conference on Nanotechnology, p. 75, Jan 2005.

Korkusinski, M., Klimeck, G., Xu, H., Lee, S., Goasguen, S. and Saied, F., "Atomistic simulations in nanostructures composed of tens of millions of atoms: Importance of long-range strain effects in quantum dots," 2005 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2005 Technical Proceedings, pp. 534-537, Jan 2005.

Ruth, P., Jiang, X., Xu, D. and Goasguen, S., "Virtual distributed environments in a shared infrastructure," Computer, vol. 38, no. 5, pp. 63-69, Jan 2005. DOI: 10.1109/MC.2005.175.

Klimeck, G., Korkusinski, M., Haiying, X., Seungwon, L., Goasguen, S. and Saied, F., "Atomistic simulations of long-range strain and spatial asymmetry effects in multimillion-atom single and double quantum dot nanostructures," International Conference on Simulation of Semiconductor Processes and Devices, SISPAD, pp. 335-338, Jan 2005.

Ruth, P., Rhee, J., Xu, D., Kennell, R. and Goasguen, S., "Autonomic live adaptation of virtual computational environments in a multi-domain infrastructure," Proceedings - 3rd International Conference on Autonomic Computing, ICAC 2006, pp. 5-14, Jan 2006.

Xu, D., Ruth, P., Rhee, J., Kennell, R. and Goasguen, S., "Short paper: Autonomic adaptation of virtual distributed environments in a multi-domain infrastructure," Proceedings of the IEEE International Symposium on High Performance Distributed Computing, pp. 317-320, Jan 2006.

Madhavan, K.P.C., Goasguen, S. and Klimeck, G., "The impact of the nanoscale vision on the future of learning and teaching," Proceedings of SPIE - The International Society for Optical Engineering, Jan 2006.

Adamo-Villani, N., Carpenter, E. and Arns, L., "An immersive virtual environment for learning sign language mathematics," ACM SIGGRAPH 2006 Educators Program, SIGGRAPH ?06, Jan 2006.

Knight, M.M. and Arns, L.L., "The relationship among age and other factors on incidence of cybersickness in immersive environment users," Proceedings - APGV 2006: Symposium on Applied Perception in Graphics and Visualization , p. 162, Jan 2006.

Bene?, B., Dorjgotov, E., Arns, L. and Bertoline, G., "Granular material interactive manipulation: Touching sand with haptic feedback," 14th International Conference in Central Europe on Computer Graphics, Visualization and Computer Vision 2006, WSCG?2006 - In Co-operation with EUROGRAPHICS, Full Papers Proceedings, pp. 295-301, Jan 2006.

Arns, L., Brisbin, M., Foldes, D. and Holland, J.D., "Virtual reality for ecosystem dynamics education," ACM SIGGRAPH 2006 Educators Program, SIGGRAPH ?06, Jan 2006.

Carpenter, E., Kim, I., Arns, L., Dutta-Berman, M.J. and Madhavan, K., "Developing a 3D simulated bio-terror crises communication training module," Proceedings of the ACM Symposium on Virtual Reality Software and Technology, VRST , pp. 342-345, Jan 2006.

Boardman, J.W., Clark, R.N., Mazer, A.S., Biehl, L.L., Kruse, F.A., Torson, J. and Staenz, K., "Development and implementation of software systems for imaging spectroscopy," International Geoscience and Remote Sensing Symposium (IGARSS), pp. 1969-1973, Jan 2006.

Adamo-Villani, N., Carpenter, E. and Arns, L., "3D sign language mathematics in immersive environment," Proceedings of the 15th IASTED International Conference on Applied Simulation and Modelling, pp. 382-388, Jan 2006.

Gough, E.S. and Kane, M.D., "Evaluating parallel computing systems in bioinformatics," Proceedings - Third International Conference on Information Technology: New Generations, ITNG 2006, pp. 233-238, Jan 2006.

Glenn, N. and Braun, D., "Lean MIS can?t miss: Manufacturing information systems," InTech, vol. 51, no. 11, pp. 60-61, Jan 2006.

Glenn, N. and Braun, D., "Investment in up-front time vital," InTech, vol. 53, no. 10, pp. 63-66, Jan 2006.

Glenn, N. and Braun, D., "Making the integration process work," InTech, vol. 53, no. 9, p. 65, Jan 2006.

Qiao, W., McLennan, M., Kennell, R., Ebert, D.S. and Klimeck, G., "Hub-based simulation and graphics hardware accelerated visualization for nanotechnology applications," IEEE Transactions on Visualization and Computer Graphics, vol. 12, no. 5, pp. 1061-1068, Jan 2006. DOI: 10.1109/TVCG.2006.150.

Klimeck, G., McLennan, M., Mannino, M., Korkusinski, M., Heitzinger, C., Kennell, R. and Clark, S., "NEMO 3-D and nanoHUB: Bridging research and education," 6th IEEE Conference on Nanotechnology, IEEE-NANO 2006, pp. 441-444, Jan 2006.

Gooding, S.L., Arns, L., Smith, P. and Tillotson, J., "Implementation of a Distributed Rendering Environment for the TeraGrid," Challenges of Large Applications in Distributed Environments, 2006 IEEE, pp. 13-21, Jun 2006.

Ahmed, S., Klimeck, G., Kearney, D., McLennan, M. and Anantram, M.P., "Quantum simulations of dual gate mosfet devices: Building and deploying community nanotechnology software tools on nanohub.org," International Journal of High Speed Electronics and Systems, vol. 17, no. 3, pp. 485-494, Jan 2007. DOI: 10.1142/S0129156407004679.

Bhargav-Spantzel, A., Woo, J. and Bertino, E., "Receipt management- transaction history based trust establishment," DIM'07 - Proceedings of the 2007 ACM Workshop on Digital Identity Management, pp. 82-91, Jan 2007.

Kalyanam, R., Zhao, L., Park, T. and Goasguen, S., "A web service-enabled distributed workflow system for scientific data processing," Proceedings of the IEEE Computer Society Workshop on Future Trends of Distributed Computing Systems, pp. 7-14, Jan 2007.

Ma, X., Li, Y., Bourgeois, M., Caffee, M., Elmore, D., Granger, D., Muzikar, P. and Smith, P., "WebCN: A web-based computation tool for in situ-produced cosmogenic nuclides," Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, vol. 259, no. 1, pp. 646-652, Jan 2007.

Matei, S.A., Miller, C., Arns, L., Rauh, N., Hartman, C. and Bruno, R., "Visible past: Learning and discovering in real and virtual space and time," First Monday, vol. 12, no. 5, Jan 2007. DOI: 10.5210/fm.v12i5.1836.

Biehl, L., "Eval-ware: Hyperspectral imaging," IEEE Signal Processing Magazine, vol. 24, no. 4, pp. 125-126, Jan 2007. DOI: 10.1109/MSP.2007.4286573.

Schubert, P.J., Vitkin, L. and Braun, D., "Model-based development for event-driven applications using MATLAB: Audio playback case study," SAE Technical Papers, Jan 2007. DOI: 10.4271/2007-01-0783.

Goasguen, S., "Grid architecture for scientific communities," IFIP International Federation for Information Processing, vol. 239, p. 397, Jan 2007. DOI: 10.1007/978-0-387-73659-4_23.

Klimeck, G., Ahmed, S.S., Bae, H., Clark, S., Haley, B., Lee, S., Naumov, M., Ryu, H., Saied, F., Prada, M., Korkusinski, M., Boykin, T.B. and Rahman, R., "Atomistic simulation of realistically sized nanodevices using NEMO 3-D - Part I: Models and benchmarks," IEEE Transactions on Electron Devices, vol. 54, no. 9, pp. 2079-2089, Jan 2007. DOI: 10.1109/TED.2007.902879.

Squicciarini, A.C., Bertino, E. and Goasguen, S., "Access control strategies for virtualized environments in grid computing systems," Proceedings of the IEEE Computer Society Workshop on Future Trends of Distributed Computing Systems, pp. 48-54, Jan 2007.

Park, T. and Zhao, L., "Requirement analysis of the portal site serving distributed climate data for e-science," Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 450-456, Jan 2007. DOI: 10.1007/978-3-540-73354-6_49.

Joseph E. Quansah, Gilbert L. Rochon, Kwamena K. Quagrainie, Steve Amisah, Mucai Muchiri, Charles Ngugi, "Remote Sensing Applications for Sustainable Aquaculture in Africa," IEEE International Geoscience and Remote Sensing Symposium, Jul 2007.

Naumov, M., Lee, S., Haley, B., Bae, H., Clark, S., Rahman, R., Ryu, H., Saied, F. and Klimeck, G., "Eigenvalue solvers for atomistic simulations of electronic structures with NEMO-3D," Journal of Computational Electronics, vol. 7, no. 3, pp. 297-300, Jan 2008. DOI: 10.1007/s10825-008-0223-5.

Sundaram, V., Zhao, L., Song, C.X., Benes, B., Veeramacheneni, R. and Kristof, P., "Real-time data delivery and remote visualization through multi-layer interfaces," Grid Computing Environments Workshop, GCE'08, pp. 1-10, Jan 2008.

Wu, J.-H., Kalyanam, R. and Givan, R., "Stochastic enforced hill-climbing," ICAPS 2008 - Proceedings of the 18th International Conference on Automated Planning and Scheduling, pp. 396-403, Jan 2008.

Woo, J., Bhagav-Spantzel, A., Squicciarini, A.C. and Bertino, E., "Verification of receipts from M-commerce transactions on NFC cellular phones," Proceedings - 10th IEEE Joint Conference on E-Commerce Technology and the 5th Enterprise Computing, E-Commerce and E-Services, CEC 2008 and EEE 2008, pp. 36-43, Jan 2008.

Zeng, Y., Liu, D., Li, G., Yu, W., Huang, Z. and Song, C., "Seamless integration of data services between spatial information Grid and TeraGrid based on Broker-based data management model," Proceedings of SPIE - The International Society for Optical Engineering, Jan 2008.

Smith, P.M., Hacker, T.J. and Song, C.X., "Implementing an industrial-strength academic cyberinfrastructure at Purdue University," IEEE International Parallel & Distributed Processing Symposium, pp. 1-7, Jan 2008.

Dorjgotov, E., Bertoline, G.R., Arns, L., Pizlo, Z. and Dunlop, S.R., "Force amplitude perception in six orthogonal directions," Symposium on Haptics Interfaces for Virtual Environment and Teleoperator Systems 2008 - Proceedings, Haptics, pp. 121-127, Jan 2008.

Everman, W.J., Medlin, C.R., Dirks Jr., R.D., Bauman, T.T. and Biehl, L., "The effect of postemergence herbicides on the spectral reflectance of corn," Weed Technology, vol. 22, no. 3, pp. 514-522, Jan 2008. DOI: 10.1614/WT-07-021.1.

Kane, M.D., Sringer, J.A., Iannotti, N. V, Gough, E., Johns, S.M., Schlueter, S.D. and Sepúlveda, M.S., "Identification of development and tissue-specific gene expression in the fathead minnow Pimephales promelas, Rafinesque using computational and DNA microarray methods," Journal of Fish Biology, vol. 72, no. 9, pp. 2341-2353, Jan 2008. DOI: 10.1111/j.1095-8649.2008.01889.x.

Heitzinger, C., Kennell, R., Klimeck, G., Mauser, N., McLennan, M. and Ringhofer, C., "Modeling and simulation of field-effect biosensors (BioFETs) and their deployment on the nanoHUB," Journal of Physics: Conference Series, Jan 2008.

Squicciarini, A.C., Lee, W., Bertino, E. and Song, C.X., "A policy-based accountability tool for grid computing systems," Asia-Pacific Services Computing Conference, 2008, vol. APSCC'08. IEEE, p. 2008, Jan 2008.

Catlett, C. et al., "TeraGrid: Analysis of organization, system architecture, and middleware enabling new types of applications," Advances in Parallel Computing, vol. 16, pp. 225-249, Jan 2008.

Fanfani, A. et al., "CMS data and workflow management system," Astroparticle, Particle and Space Physics, Detectors and Medical Physics Applications - Proceedings of the 10th Conference, pp. 441-445, Jan 2008.

Klimeck, G., McLennan, M., Lundstrom, M.S. and Adams III, G.B., "nanoHUB.org - online simulation and more materials for semiconductors and nanoelectronics in education and research," 2008 8th IEEE Conference on Nanotechnology, IEEE-NANO, pp. 401-404, Jan 2008.

Lee, J.-W., Braun, D. and Song, C.X., "Rapid component-based development for Condor job submission," Grid Computing Environments Workshop (GCE?08), pp. 1-5, Jan 2008.

Paci, F., Bertino, E., Kerr, S., Lint, A., Squicciarini, A. and Woo, J., "VeryIDX - A digital identity management system for pervasive computing environments," Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 268-279, Jan 2008. DOI: 10.1007/978-3-540-87785-1_24.

Vinaitheerthan Sundaram, Yi Ru, Bedrich Benes, Lan Zhao, X. Carol Song, Taezoon Park, Gary Bertoline, Matthew Huber, "An Integrated System for Near Real-Time 3D Visualization of NEXRAD Level II Data Using TeraGrid," TeraGrid 2008 Conference, Las Vegas, NV, Jun 2008.

Hsin-I Chang, Dev Niyogi, Fei Chen, Anil Kumar, X. Carol Song, Lan Zhao, Rao S. Govindaraju, Venkatesh Merwade, Ming Lei, Ken Scheeringa, "Developing a TeraGrid Based Land Surface Hydrology and Weather Modeling," TeraGrid 2008 Conference, Las Vegas, NV, Jun 2008.

T. Hacker and G. Bertoline, "A Curriculum for Petascale Computing," TeraGrid 2008 Conference, Las Vegas, NV, Jun 2008.

T. Hacker and P. Smith, "Building a Network Simulation Model of the TeraGrid Network," TeraGrid 2008 Conference, Las Vegas, NV, Jun 2008.

Hangseng Bae, Steve Clark, Ben Haley, Ryu Hoon, Gerhard Klimeck, Sunhee Lee, Mathieu Luisier, Faisal Saied, "A Nano-Electronics Simulator for Petascale Computing: From NEMO to OMEN," TeraGrid 2008 Conference, Las Vegas, NV, Jun 2008.

S. Lathrop, L. McGinnis, S. Brown, J. White, B. Armosky, T. Drummond, J. Ferguson, R. Gerber, T. J. Hacker, M.A. Leung, J.A. Rome, K. Traxler, J. Ziebarth, "HPC University," TeraGrid 2008 Conference, Las Vegas, NV, Jun 2008.

Woo, J., Padma, J., Lee, J.-W., Braun, D. and Song, C.X., "Puffin: a fast and efficient web service-based condor job manager," The 5th Grid Computing Environments Workshop, p. 2, Jan 2009.

Zhao, L., Wu, S., Veeramacheneni, R., Song, C.X. and Biehl, L., "Delivering real-time satellite data to a broader audience," The 5th Grid Computing Environments Workshop, p. 3, Jan 2009.

Rochon, G., Wahab, M.A., El Afandi, G.S., Altay, G., Ersoy, O., Song, X.C., Zhao, L., Niyogi, D., Biehl, L., Grant, D. and others, "The Kamal Ewida Earth Observatory: A NATO supported real-time remote sensing receiving station being established in Egypt with HPC-enabled near-real-time data products for mitigation of environmental & public health disasters," Geoscience and Remote Sensing Symposium, 2009 IEEE International, IGARSS 2009, Jan 2009.

Rochon, G.L., Araya, B., Biehl, L.L., Grant, D., Ersoy, O., Quansah, J., Altay, G., Wahab, M.M.A., El Afandi, G.S., El Ghazawi, T., Mohamed, M.A., Shokr, M. and Sithole, H., "Acquisition, analysis and distribution of real-time multi-sensor satellite data, in a high performance computing environment, for disaster mitigation applications: Case studies from the NATO science for peace funded kamal ewida earth observatory in Egypt, the electronic Geophysical Year (eGY)-Africa and the US Geological Survey supported AmericaView," Proceedings of IEEE Sensors, pp. 1020-1025, Jan 2009.

Altay, G., Ersoy, O., Wahab, M.A., Afandi, G.E., Shokr, M., Ghazawi, T.E., Mohamed, M.A., Eleithy, B., El-Magd, I.A., Biehl, L., Grant, D., Rochon, G. and Fall, S., "Deployment of real-time satellite remote sensing infrastructure to support disaster mitigation: A NATO science for peace collaboration project with research universities in Turkey, Egypt and the USA," RAST 2009 - Proceedings of 4th International Conference on Recent Advances Space Technologies, pp. 18-22, Jan 2009.

Paci, F., Bertino, E., Kerr, S., Squicciarini, A. and Woo, J., "An Overview of veryIDX - A privacy-preserving digital identity management system for mobile devices," Journal of Software, vol. 4, no. 7, pp. 696-706, Jan 2009.

Kuriyan, K., Catlin, A.C. and Reklaitis, G. V, "pharmaHUB: Building a virtual organization for pharmaceutical engineering and science," Journal of Pharmaceutical Innovation, vol. 4, no. 2, pp. 81-89, Jan 2009. DOI: 10.1007/s12247-009-9061-7.

Paci, F., Shang, N., Kerr, S., Steuer, K., Woo, J. and Bertino, E., "Privacy-preserving management of transactions' receipts for mobile environments," ACM International Conference Proceeding Series, pp. 73-84, Jan 2009.

Hu, F. and Evans, J.J., "Power and environment aware control of Beowulf clusters," Cluster Computing, vol. 12, no. 3, pp. 299-308, Jan 2009. DOI: 10.1007/s10586-009-0085-z.

Govindaraju, R.S., Engel, B., Ebert, D., Fossum, B., Huber, M., Jafvert, C., Kumar, S., Merwade, V., Niyogi, D., L. Oliver S. Prabhakar, G.R., Song, X.C. and Zhao, L., "Vision of cyberinfrastructure for end-to-end environmental explorations (C4E4)," J, vol. Hydrologic Engineering. 14, no. 1, pp. 53-64, Jan 2009.

Haley, B.P., Lee, S., Luisier, M., Ryu, H., Saied, F., Clark, S., Bae, H. and Klimeck, G., "Advancing nanoelectronic device modeling through peta-scale computing and deployment on nanoHUB," Journal of Physics: Conference Series, Jan 2009.

Maji, A.K., Hao, K., Sultana, S. and Bagchi, S., "Characterizing failures in mobile OSes: A case study with android and symbian," Proceedings - International Symposium on Software Reliability Engineering, ISSRE, pp. 249-258, Jan 2010.

Shirke, K., Springer, J.A., Gough, E.S., Roumani, A., Riley, C.P. and Buck, C., "A case study in clinical data management for cancer proteomics," 19th International Conference on Software Engineering and Data Engineering 2010, SEDE 2010, pp. 301-306, Jan 2010.

Riley, C.P., Gough, E.S., He, J., Jandhyala, S.S., Kennedy, B., Orcun, S., Ouzzani, M., Buck, C., Roumani, A.M. and Zhang, X., "The proteome discovery pipeline - a data analysis pipeline for mass spectrometry-based differential proteomics discovery," Open Proteomics Journal, vol. 3, pp. 8-19, Jan 2010.

Zhao, L., Lee, W., Song, C.X., Huber, M. and Goldner, A., "Bringing high performance climate modeling into the classroom," Proceedings of the 2010 TeraGrid Conference, p. 24, Jan 2010.

Dunston, P.S., Arns, L.L. and McGlothlin, J.D., "Virtual reality mock-ups for healthcare facility design and a model for technology hub collaboration," Journal of Building Performance Simulation, vol. 3, no. 3, pp. 185-195, Jan 2010. DOI: 10.1080/19401490903580742.

Popescu, V., Rosen, P., Arns, L., Tricoche, X., Wyman, C. and Hoffmann, C.M., "The general pinhole camera: Effective and efficient nonuniform sampling for visualization," IEEE Transactions on Visualization and Computer Graphics, vol. 16, no. 5, pp. 777-790, Jan 2010. DOI: 10.1109/TVCG.2010.22.

McLennan, M. and Kennell, R., "HUBzero: a platform for dissemination and collaboration in computational science and engineering," Computing in Science & Engineering, vol. 12, no. 2, pp. 48-53, Jan 2010.

Shan, J., Hussain, E., Kim, K. and Biehl, L., "Flood mapping with satellite images and its web service," Photogrammetric Engineering and Remote Sensing, vol. 76, no. 2, pp. 102-105, Jan 2010.

Braun, D. and Neumeister, N., "A Web portal for CMS Grid job submission and management," Journal of Physics: Conference Series, Jan 2010.

Rochon, G.L., Niyogi, D., Fall, S., Quansah, J.E., Biehl, L., Araya, B., Maringanti, C., Valcarcel, A.T., Rakotomalala, L., Rochon, H.S., Mbongo, B.H. and Thiam, T., "Best management practices for corporate, academic and governmental transfer of sustainable technologies to developing countries," Clean Technologies and Environmental Policy, vol. 12, no. 1, pp. 19-30, Jan 2010. DOI: 10.1007/s10098-009-0218-3.

Stewart, C.A. et al., "Implementation, performance, and science results from a 30.7 TFLOPS IBM BladeCenter cluster," Concurrency Computation Practice and Experience, vol. 22, no. 2, pp. 157-174, Jan 2010. DOI: 10.1002/cpe.1539.

Carlyle, A.G., Harrell, S.L. and Smith, P.M., "Cost-Effective HPC: the community or the cloud?," Proceedings of the 2010 IEEE Second International Conference on Cloud Computing Technology and Science (CloudCom), pp. 169-176, Jan 2010.

Kumar, S., Merwade, V., Lee, W., Zhao, L. and Song, C., "Hydroclimatological impact of century-long drainage in midwestern United States: CCSM sensitivity experiments," Journal of Geophysical Research: Atmospheres (1984-2012), vol. 115, no. D14, Jan 2010.

Zhao, L., Song, C.X., Lee, J., Kim, J.R., Feng, W., Merwade, V. and Villoria, N., "Bring integrated GIS data and modeling capabilities into HUBzero platform," ACM SIGSPATIAL Second International Workshop on High Performance and Distributed Geographic Information Systems, pp. 30-33, Jan 2011.

Harrell, S.L., Smith, P.M., Smith, D., Hoefler, T., Labutina, A.A. and Overmyer, T., "Methods of creating student cluster competition teams," Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, p. 50, Jan 2011.

Zhao, L., Song, C.X., Thompson, C.S., Zhang, H., Lakshminarayanan, M., DeLuca, C., Murphy, S., Saint, K., Middleton, D., Wilhelmi, N. and others, "Developing an integrated end-to-end TeraGrid climate modeling environment," 2011 TeraGrid Conference: Extreme Digital Discovery, Jan 2011.

Lee, H., Zhao, L., Bowen, G.J., Miller, C.C., Kalangi, A., Zhang, T. and West, J.B., "Enabling online geospatial isotopic model development and analysis," Proceedings of the TeraGrid 2011 Conference: Extreme Digital Discovery, TG'11, Jan 2011.

Wu, J.-H., Kalyanam, R. and Givan, R., "Stochastic enforced hill-climbing," Journal of Artificial Intelligence Research, vol. 42, pp. 815-850, Jan 2011.

Andino, G.K. and Hunt, G.J., "A scientific note on a new assay to measure honeybee mite-grooming behavior," Apidologie, vol. 42, no. 4, pp. 481-484, Jan 2011. DOI: 10.1007/s13592-011-0004-1.

McLennan, M., "Managing data within the HUBzeroTM platform," OMICS A Journal of Integrative Biology, vol. 15, no. 4, pp. 247-249, Jan 2011. DOI: 10.1089/omi.2011.0018.

Smith, A., Balazinska, M., Baru, C., Gomelsky, M., McLennan, M., Rose, L., Smith, B., Stewart, E. and Kolker, E., "Biology and data-intensive scientific discovery in the beginning of the 21st century," OMICS A Journal of Integrative Biology, vol. 15, no. 4, pp. 209-212, Jan 2011. DOI: 10.1089/omi.2011.0006.

Joseph, N., Whittinghill, D.M., Howell, K.C. and Braun, D.W., "Work-in-progress stereoscopic visualization as a tool for teaching astronomy concepts," ASEE Annual Conference and Exposition, Conference Proceedings, Jan 2011.

Srivastava, I., Fisher, T.S., Fernando, S., Catlin, A.C., Gupta, P. and Rao, P.S., "Online thermal properties database for structure-property correlated materials," ASME 2011 International Mechanical Engineering Congress and Exposition, IMECE 2011, pp. 1243-1244, Jan 2011.

Zentner, L.K., Clark, S.M., Madhavan, K.P.C., Shivarajapura, S., Farnsworth, V. and Klimeck, G., "Automated grid probe system to improve end-to-end grid reliability for a science gateway," Proceedings of the TeraGrid 2011 Conference: Extreme Digital Discovery, TG'11, Jan 2011.

Ruth, P., Rhee, J., Xu, D., Goasguen, S. and Kennell, R., "Autonomic live adaptation of virtual networked environments in a multidomain infrastructure," Journal of Internet Services and Applications, vol. 2, no. 2, pp. 141-154, Jan 2011. DOI: 10.1007/s13174-011-0031-1.

Klimeck, G., Adams Iii, G.B., Madhavan, K.P.C., Denny, N., Zentner, M.G., Shivarajapura, S., Zentner, L.K. and Beaudoin, D.L., "Social networks of researchers and educators on nanoHUB.org," Proceedings - 11th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, CCGrid 2011, pp. 560-565, Jan 2011.

Hacker, T.J., Eigenmann, R., Bagchi, S., Irfanoglu, A., Pujol, S., Catlin, A. and Rathje, E., "The NEEShub Cyberinfrastructure for Earthquake Engineering," Computing in Science Engineering, vol. 13, no. 4, pp. 67-78, Jan 2011. DOI: 10.1109/MCSE.2011.70.

Zentner, L.K., Clark, S.M., Smith, P.M., Shivarajapura, S., Farnsworth, V., Madhavan, K.P.C. and Klimeck, G., "Practical considerations in cloud utilization for the science gateway nanoHUB.org," 2011 Fourth IEEE International Conference on Utility and Cloud Computing (UCC), Jan 2011.

Zhao, Z., Woo, J. and Braun, D., "Google web toolkit for OGCE gadget based architecture," ACM Workshop on Gateway Computing Environments (OGCE), pp. 37-42, Jan 2011.

Maji, A.K. and Bagchi, S., "V-CAPS: A confidentiality and anonymity preserving routing protocol for content-based publish-subscribe networks," Lecture Notes of the Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering, vol. 96 LNICST, pp. 281-302, Jan 2012. DOI: 10.1007/978-3-642-31909-9_16.

Dadarlat, V.M., Gorenstein, L.A. and Post, C.B., "Prediction of protein relative enthalpic stability from molecular dynamics simulations of the folded and unfolded states," Biophysical Journal, vol. 103, no. 8, pp. 1762-1773, Jan 2012. DOI: 10.1016/j.bpj.2012.08.048.

Maji, A.K., Arshad, F.A., Bagchi, S. and Rellermeyer, J.S., "An empirical study of the robustness of Inter-component Communication in Android," Proceedings of the International Conference on Dependable Systems and Networks, Jan 2012.

Merwade, V., Feng, W., Zhao, L. and Song, C.X., "WaterHUB: a resource for students and educators for learning hydrology," The 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond, Jan 2012.

Bowen, G.J., West, J.B., Zhao, L., Takahashi, G., Miller, C. and Zhang, T., "Cyberinfrastructure for isotope analysis and modeling," Eos, vol. 93, no. 19, pp. 185-187, Jan 2012. DOI: 10.1029/2012EO190002.

Krupke, C.H., Hunt, G.J., Eitzer, B.D., Andino, G. and Given, K., "Multiple routes of pesticide exposure for honey bees living near agricultural fields," PLoS ONE, vol. 7, no. 1, Jan 2012. DOI: 10.1371/journal.pone.0029268.

Tayyebi, A., Pekin, B.K., Pijanowski, B.C., Plourde, J.D., Doucette, J.S. and Braun, D., "Hierarchical modeling of urban growth across the conterminous USA: Developing meso-scale quantity drivers for the Land Transformation Model," Journal of Land Use Science, vol. 8, no. 4, pp. 422-442, Jan 2013. DOI: 10.1080/1747423X.2012.675364.

Farnsworth, V.A., Lundstrom, M.S., Datta, S., Reifenberger, R., Raman, A., Fisher, T., Strachan, A., McLennan, M., Shivarajapura, S., Zentner, L.K., Madhavan, K. and Klimeck, G., "NanoHUB-U: A science gateway ventures into structured online education," Proceedings of the IEEE Conference on Nanotechnology, pp. 217-220, Jan 2013.

Mallya, G., Zhao, L., Song, C.X., Niyogi, D. and Govindaraju, R.S., "2012 Midwest Drought in the United States," Journal of Hydrologic Engineering, vol. 8, no. 7, pp. 737-745, Jan 2013. DOI: 10.1061/(ASCE)HE.1943-5584.0000786.

Madhavan, K., Zentner, M. and Klimeck, G., "Learning and research in the cloud," Nature Nanotechnology, vol. 8, no. 11, pp. 786-789, Jan 2013. DOI: 10.1038/nnano.2013.231.

Madhavan, K., Zentner, L., Farnsworth, V., Samek, S., Zentner, M., Denny, N. and Klimeck, G., "NanoHUB.org: Cloud-based services for nanoscale modeling, simulation, and education," Nanotechnology Reviews, vol. 2, pp. 107-117, Jan 2013.

Kalyanam, R., Zhao, L., Song, C.X., Wong, Y.L., Lee, J. and Villoria, N.B., "iData: a community geospatial data sharing environment to support data-driven science," The Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery (San Diego, CA, Jul. 2013), p. 41, Jul 2013.

Kristof, P., Benes, B., Song, C.X. and Zhao, L., "A system for large-scale visualization of streaming Doppler data," IEEE International Conference on Big Data (Sillicon Valley, CA, Oct. 2013), pp. 33-40, Oct 2013.

McCartney, G., Hacker, T. and Yang, B., "Empowering Faculty: A Campus Cyberinfrastructure Strategy for Research Communities," Educause Review, Jan 2014.

Huang, J. et al., "Development of the International Thymic Malignancy Interest Group International Database: An unprecedented resource for the study of a rare group of tumors," Journal of Thoracic Oncology, vol. 9, no. 10, pp. 1573-1578, Jan 2014. DOI: 10.1097/JTO.0000000000000269.

Witz, S., Buening, N.R., Catlin, A.C., Malloy, W., Kindsfater, J.L., Walroth, T., Washington, A. and Zink, R., "Using informatics to improve medical device safety and systems thinking," Biomedical Instrumentation and Technology, vol. 48, no. Horizons, pp. 38-43, Jan 2014. DOI: 10.2345/0899-8205-48.s2.38.

Jeong, J.C., Jo, S., Wu, E.L., Qi, Y., Monje-Galvan, V., Yeom, M.S., Gorenstein, L., Chen, F., Klauda, J.B. and Im, W., "ST-analyzer: A web-based user interface for simulation trajectory analysis," Journal of Computational Chemistry, vol. 35, no. 12, pp. 957-963, Jan 2014. DOI: 10.1002/jcc.23584.

Colby, K.D., Dietz, D.T., Smith, P.M. and Cumberland, D.D., "Self-service queue and user management in shared clusters," Proceedings of the First International Workshop on HPC User Support Tools, pp. 22-31, Jan 2014.

Bowen, G.J., Liu, Z., Vander Zanden, H.B., Zhao, L. and Takahashi, G., "Geographic assignment with stable isotopes in IsoMAP," Methods in Ecology and Evolution, vol. 5, no. 3, pp. 201-206, Jan 2014. DOI: 10.1111/2041-210X.12147.

Maji, A.K., Mitra, S., Zhou, B., Bagchi, S. and Verma, A., "Mitigating interference in cloud services by middleware reconfiguration," Proceedings of the 15th International Middleware Conference, Middleware 2014, pp. 277-288, Jan 2014.

Pijanowski, B.C., Tayyebi, A., Doucette, J., Pekin, B.K., Braun, D. and Plourde, J., "A big data urban growth simulation at a national scale: Configuring the GIS and neural network based Land Transformation Model to run in a High Performance Computing (HPC) environment," Environmental Modelling and Software, vol. 51, pp. 250-268, Jan 2014. DOI: 10.1016/j.envsoft.2013.09.015.

Vanderbilt, V.C., Daughtry, C.S.T. and Biehl, L.L., "Is there spectral variation in the polarized reflectance of leaves? ," Proceedings of SPIE - The International Society for Optical Engineering, Jan 2014.

Andino, G.K., Gribskov, M., Hunt, G.J., Anderson, D. and Evans, J.D., "Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)," Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015, pp. 1715-1716, Jan 2015.

Harrell, S., Nam, H.A., Vergara, V., Keville, K. and Kamalic, D., "Student Cluster Competition: A Multi-disciplinary Undergraduate HPC Educational Tool," EduHPC '15 Proceedings of the Workshop on Education for High-Performance Computing, Jan 2015.

Catlin, A.C., Fernando, S., Gamage, R., Renner, L., Antwi, S., Tettey, J.K., Amisah, K.A., Kyriakides, T., Cong, X., Reynolds, N.R. and Paintsil, E., "Sankofa pediatric HIV disclosure intervention cyber data management: Building capacity in a resource-limited setting and ensuring data quality," AIDS Care - Psychological and Socio-Medical Aspects of AIDS/HIV, vol. 27, pp. 99-107, Jan 2015. DOI: 10.1080/09540121.2015.1023246.

Maji, A.K., Mitra, S. and Bagchi, S., "ICE: An integrated configuration engine for interference mitigation in cloud services," Proceedings - IEEE International Conference on Autonomic Computing, ICAC 2015, pp. 91-100, Jan 2015.

Prokopy, L.S. et al., "Using a team survey to improve team communication for enhanced delivery of agro-climate decision support tools," Agricultural Systems, vol. 138, pp. 31-37, Jan 2015.

Reynolds, N.R., Ofori-Atta, A., Lartey, M., Renner, L., Antwi, S., Enimil, A., Catlin, A.C., Fernando, S., Kyriakides, T.C. and Paintsil, E., "SANKOFA: A multisite collaboration on paediatric HIV disclosure in Ghana," AIDS, vol. 29, Jan 2015. DOI: 10.1097/QAD.0000000000000725.

Catlin, A.C., Malloy, W.X., Arthur, K.J., Gaston, C., Young, J., Fernando, S. and Fernando, R., "Comparative analytics of infusion pump data across multiple hospital systems," American Journal of Health-System Pharmacy, vol. 72, no. 4, pp. 317-324, Jan 2015. DOI: 10.2146/ajhp140424.

McLennan, M., Clark, S., Deelman, E., Rynge, M., Vahi, K., McKenna, F., Kearney, D. and Song, C., "HUBzero and Pegasus: integrating scientific workflows into science gateways," Concurrency and Computation: Practice and Experience, vol. 27, no. 2, pp. 328-343, Jan 2015.

Lawrence, K.A., Wilkins-Diehr, N., Wernert, J.A., Pierce, M., Zentner, M. and Marru, S., "Who cares about science gateways? A large-scale survey of community use and needs," Proceedings of GCE 2014: 9th Gateway Computing Environments Workshop, held in conjunction with SC 2014: The International Conference for High Performance Computing, Networking, Storage and Analysis, pp. 1-4, Jan 2015.

Thompson, C.S., Zhao, L., Clark, S.M., Barbone, P.E., Oberai, A., Song, C.X., Seidl, D.T. and Liu, T., "Bring the NLACE model online using XSEDE and HUBzero," Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, p. 36, Jan 2015.

Arora, R., Chen, K., Gupta, M., Clark, S. and Song, C., "Leveraging DiaGrid hub for interactively generating and running parallel programs," Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, p. 44, Jan 2015.

Hunt, M., Haley, B., McLennan, M., Koslowski, M., Murthy, J. and Strachan, A., "PUQ: A code for non-intrusive uncertainty propagation in computer simulations," Computer Physics Communications, vol. 194, pp. 97-107, Jan 2015. DOI: 10.1016/j.cpc.2015.04.011.

Howison, J., Deelman, E., McLennan, M.J., Da Silva, R.F. and Herbsleb, J.D., "Understanding the scientific software ecosystem and its impact: Current and future measures," Research Evaluation, vol. 24, no. 4, pp. 454-470, Jan 2015. DOI: 10.1093/reseval/rvv014.

Lawrence, K.A., Zentner, M., Wilkins-Diehr, N., Wernert, J.A., Pierce, M., Marru, S. and Michael, S., "Science gateways today and tomorrow: Positive perspectives of nearly 5000 members of the research community," Concurrency Computation, vol. 27, no. 16, pp. 4252-4268, Jan 2015. DOI: 10.1002/cpe.3526.

Lyu, Y., Zhu, X., Xiang, N. and Narsimhan, G., "Molecular Dynamics Study of Pore Formation by Melittin in a 1,2-Dioleoyl-sn-glycero-3-phosphocholine and 1,2-Di(9Z-octadecenoyl)-sn-glycero-3-phospho-(1?-rac-glycerol) Mixed Lipid Bilayer," Industrial and Engineering Chemistry Research, vol. 54, no. 42, Jan 2015. DOI: 10.1021/acs.iecr.5b01217.

Bacolla, A., Zhu, X., Chen, H., Howells, K., Cooper, D.N. and Vasquez, K.M., "Local DNA dynamics shape mutational patterns of mononucleotide repeats in human genomes," Nucleic Acids Research, vol. 43, no. 10, pp. 5065-5080, Jan 2015. DOI: 10.1093/nar/gkv364.

Zhang, N., Zhang, P., Zhang, L., Zhu, X., Huang, L. and Deng, Y., "Performance examinations of multiple time-stepping algorithms on stampede supercomputer," ACM International Conference Proceeding Series, Jan 2015.

Zentner, M.G., "In the flow: Evolving from utility based social medium to community peer," Jan 2015.

Xiang, N., Lyu, Y., Zhu, X., Bhunia, A.K. and Narsimhan, G., "Methodology for identification of pore forming antimicrobial peptides from soy protein subunits ?-conglycinin and glycinin," Peptides, vol. 85, pp. 27-40, Jan 2016. DOI: 10.1016/j.peptides.2016.09.004.

Thompson, C.S., Clark, S.M. and Song, X.C., "The XSEDE BLAST gateway: Leveraging campus development for the XSEDE community," ACM International Conference Proceeding Series, Jan 2016.

Feng, T., Zhu, X. and Campanella, O., "Molecular modeling tools to characterize the structure and complexation behavior of carbohydrates," Current Opinion in Food Science, vol. 9, pp. 62-69, Jan 2016. DOI: 10.1016/j.cofs.2016.08.003.

Andino, G.K., Gribskov, M., Anderson, D.L., Evans, J.D. and Hunt, G.J., "Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)," BMC Genomics, vol. 17, no. 1, Jan 2016. DOI: 10.1186/s12864-016-3130-3.

Arthur, K.J., Catlin, A.C., Quebe, A. and Washington, A., "Changing smart pump vendors: Lessons learned," Hospital Pharmacy, vol. 51, no. 9, pp. 782-789, Jan 2016. DOI: 10.1310/hpj5109-782.

Julian, S., Shuey, M. and Cook, S., "Containers in research: Initial experiences with lightweight infrastructure," ACM International Conference Proceeding Series, Jan 2016.

Rajib, M.A., Merwade, V., Kim, I.L., Zhao, L., Song, C. and Zhe, S., "SWATShare--A web platform for collaborative research and education through online sharing, simulation and visualization of SWAT models," Environmental Modelling and Software, vol. 75, pp. 498-512, Jan 2016.

Villoria, N.B., Zhao, L., Song, C.X. and ShinShin, J., "Rapid aggregation of global gridded crop model outputs to facilitate cross-disciplinary analysis of climate change impacts in agriculture," Environmental Modelling and Software, vol. 75, pp. 193-201, Jan 2016.

Gesing, S., Hayden, L.B., Marru, S., Pierce, M.E., Dahan, M., Lawrence, K., Wilkins-Diehr, N. and Zentner, M., "Lightning talk: The science gateways community institute - Supporting communities to achieve sustainability for their science gateways," CEUR Workshop Proceedings, Jan 2016.

Idaszak, R. et al., "Lightning talk: HydroShare - A case study in software engineering best practices and culture change for developing sustainable community software," CEUR Workshop Proceedings, Jan 2016.

Pouchard, L., Zhang, B., Smith, P., Gasc, A. and Pijanowski, B., "Data Storage and Sharing for the Long Tail of Science," New York Scientific Data Summit (NYSDS), Jan 2016.

Mitra, S., Javagal, S., Maji, A.K., Gamblin, T., Moody, A., Harrell, S. and Bagchi, S., "A Study of Failures in Community Clusters: The Case of Conte," 2016 IEEE International Symposium on Software Reliability Engineering Workshops (ISSREW), pp. 189-196, Oct 2016.

Korst, R.J., Fernando, S., Catlin, A.C., Rutledge, J.R., Girard, N., Huang, J. and Detterbeck, F., "Positron Emission Tomography in Thymic Tumors: Analysis Using a Prospective Research Database," Annals of Thoracic Surgery, vol. 104, no. 6, pp. 1815-1820, Jan 2017. DOI: 10.1016/j.athoracsur.2017.06.053.

Gesing, S., Zentner, M., Casavan, J., Hillery, B., Vorvoreanu, M., Heiland, R., Marru, S., Pierce, M., Mullinix, N. and Maron, N., "Science gateways incubator: Software sustainability meets community needs," Proceedings - 13th IEEE International Conference on eScience, eScience 2017, pp. 477-485, Jan 2017.

Akin, D. et al., "Linux clusters institute workshops: Building the HPC and research computing systems professionals workforce," Proceedings of HPCSYSPROS 2017: HPC Systems Professionals Workshop, Held in conjunction with SC 2017: The International Conference for High Performance Computing, Networking, Storage and Analysis, Jan 2017.

Kalyanam, R. and Yang, B., "Try-CybSI: An extensible cybersecurity learning and demonstration platform," SIGITE 2017 - Proceedings of the 18th Annual Conference on Information Technology Education, pp. 41-46, Jan 2017.

Kalyanam, R., Campbell, R., Kearney, D., Delgass, L., Biehl, L., Zhao, L., Ellis, C. and Song, C., "Cloud-enabling a collaborative research platform: The gabbs story," ACM International Conference Proceeding Series, Jan 2017.

Andino, G.K., Brazil, M., Gribskov, M. and Smith, P., "Advancing the representation of women in HPC at Purdue University," ACM International Conference Proceeding Series, Jan 2017.

Niyogi, D., Jacobs, E.M., Liu, X., Kumar, A., Biehl, L. and Raob, P.S.C., "Assessment of a long-term high-resolution hydroclimatic dataset for the U," S, vol. Midwest. Earth Interactions. 21, no. 4, Jan 2017. DOI: 10.1175/EI-D-16-0022.1.

Müller, C. et al., "Global gridded crop model evaluation: Benchmarking, skills, deficiencies and implications," Geoscientific Model Development, vol. 10, no. 4, pp. 1403-1422, Jan 2017. DOI: 10.5194/gmd-10-1403-2017.

Baldwin, M.E., Zhu, X., Smith, P.M., Harrell, S.L., Skeel, R. and Maji, A., "Scholar: A Campus HPC Resource to Enable Computational Literacy," Proceedings of EduHPC 2016: Workshop on Education for High-Performance Computing - Held in conjunction with SC 2016: The International Conference for High Performance Computing, Networking, Storage and Analysis, pp. 25-31, Jan 2017.

Biehl, L.L., Zhao, L., Song, C.X. and Panza, C.G., "Cyberinfrastructure for the collaborative development of U2U decision support tools," Climate Risk Management, vol. 15, pp. 90-108, Jan 2017. DOI: 10.1016/j.crm.2016.10.003.

Brunswicker, S., Matei, S.A., Zentner, M., Zentner, L. and Klimeck, G., "Creating impact in the digital space: digital practice dependency in communities of digital scientific innovations," Scientometrics, vol. 110, no. 1, pp. 417-442, Jan 2017. DOI: 10.1007/s11192-016-2106-z.

Gesing, S., Dahan, M., Zentner, M., Wilkins-Diehr, N. and Lawrence, K., "The science gateways community institute: Going beyond borders," CEUR Workshop Proceedings, Jan 2017.

Angel, J.R., Widhalm, M., Todey, D., Massey, R. and Biehl, L., "The U2U Corn Growing Degree Day tool: Tracking corn growth across the US Corn Belt," Climate Risk Management, vol. 15, pp. 73-81, Jan 2017. DOI: 10.1016/j.crm.2016.10.002.

Xiang, N., Lyu, Y., Zhu, X., Bhunia, A.K. and Narsimhan, G., "Effect of physicochemical properties of peptides from soy protein on their antimicrobial activity," Peptides, vol. 94, pp. 10-18, Jan 2017. DOI: 10.1016/j.peptides.2017.05.010.

Feng, T., Wang, K., Liu, F., Ye, R., Zhu, X., Zhuang, H. and Xu, Z., "Structural characterization and bioavailability of ternary nanoparticles consisting of amylose, ?-linoleic acid and ?-lactoglobulin complexed with naringin," International Journal of Biological Macromolecules, vol. 99, pp. 365-374, Jan 2017. DOI: 10.1016/j.ijbiomac.2017.03.005.

Lyu, Y., Xiang, N., Zhu, X. and Narsimhan, G., "Potential of mean force for insertion of antimicrobial peptide melittin into a pore in mixed DOPC/DOPG lipid bilayer by molecular dynamics simulation," Journal of Chemical Physics, vol. 146, no. 15, Jan 2017. DOI: 10.1063/1.4979613.

Wu, X., Wei, P.-H., Zhu, X., Wirth, M.J., Bhunia, A. and Narsimhan, G., "Effect of immobilization on the antimicrobial activity of a cysteine-terminated antimicrobial Peptide Cecropin P1 tethered to silica nanoparticle against E. coli O157:H7 EDL933," Colloids and Surfaces B: Biointerfaces, vol. 156, pp. 305-312, Jan 2017. DOI: 10.1016/j.colsurfb.2017.05.047.

Liu, X., Jacobs, E., Kumar, A., Biehl, L., Andresen, J. and Niyogi, D., "The Purdue Agro-climatic (PAC) dataset for the U.S. Corn Belt: Development and initial results," Climate Risk Management, vol. 15, pp. 61-72, Jan 2017. DOI: 10.1016/j.crm.2016.10.005.

Zhao, L., Song, C.X., Kalyanam, R., Biehl, L., Campbell, R., Delgass, L., Kearney, D., Wan, W., Shin, J., Kim, I. and Ellis, C., "GABBS - Reusable Geospatial Data Analysis Building Blocks for Science Gateways," 9th International Workshop on Science Gateways (IWSG 2017), Jan 2017.

Dietz, D.T., Gorenstein, L.A., Veldman, G.S. and Colby, K.D., "Shared Research Group Storage Solution with Integrated Access Management," Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact, New York, NY, USA, pp. 14:1-14:7, Jan 2017.

Colby, K., Maji, A.K., Rahman, J. and Bottum, J., "Testpilot: A Flexible Framework for User-centric Testing of HPC Clusters," Proceedings of the Fourth International Workshop on HPC User Support Tools, New York, NY, USA, pp. 5:1-5:10, Jan 2017.

Smith, P.M., St. John, J. and Harrell, S.L., "There and Back Again: A Case Study of Configuration Management of HPC," Proceedings of the HPC Systems Professionals Workshop, New York, NY, USA, pp. 5:1-5:7, Jan 2017.

Zhang, M., Wang, J., Lyu, Y., Fitriyanti, M., Hou, H., Jin, Z., Zhu, X. and Narsimhan, G., "Understanding the antimicrobial activity of water soluble ?-cyclodextrin/alamethicin complex," Colloids and Surfaces B: Biointerfaces, vol. 172, pp. 451-458, Jan 2018. DOI: 10.1016/j.colsurfb.2018.08.065.

Cheng, L., Feng, T., Zhang, B., Zhu, X., Hamaker, B., Zhang, H. and Campanella, O., "A molecular dynamics simulation study on the conformational stability of amylose-linoleic acid complex in water," Carbohydrate Polymers, vol. 196, pp. 56-65, Jan 2018. DOI: 10.1016/j.carbpol.2018.04.102.

Baker, J.R., Gilbert, J., Paula, S., Zhu, X., Sakoff, J.A. and McCluskey, A., "Dichlorophenylacrylonitriles as AhR Ligands That Display Selective Breast Cancer Cytotoxicity in vitro," ChemMedChem, vol. 13, no. 14, pp. 1447-1458, Jan 2018. DOI: 10.1002/cmdc.201800256.

Hou, H., Wang, S., Zhu, X., Li, Q., Fan, Y., Cheng, D. and Li, B., "A novel calcium-binding peptide from Antarctic krill protein hydrolysates and identification of binding sites of calcium-peptide complex," Food Chemistry, vol. 243, pp. 389-395, Jan 2018. DOI: 10.1016/j.foodchem.2017.09.152.

Lyu, Y., Xiang, N., Mondal, J., Zhu, X. and Narsimhan, G., "Characterization of Interactions between Curcumin and Different Types of Lipid Bilayers by Molecular Dynamics Simulation," Journal of Physical Chemistry B, vol. 122, no. 8, pp. 2341-2354, Jan 2018. DOI: 10.1021/acs.jpcb.7b10566.

Xiang, N., Lyu, Y., Zhu, X. and Narsimhan, G., "Investigation of the interaction of amyloid ? peptide (11-42) oligomers with a 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) membrane using molecular dynamics simulation," Physical Chemistry Chemical Physics, vol. 20, no. 10, pp. 6817-6829, Jan 2018. DOI: 10.1039/c7cp07148e.

Zhang, M.-K., Lyu, Y., Zhu, X., Wang, J.-P., Jin, Z.-Y. and Narsimhan, G., "Enhanced solubility and antimicrobial activity of alamethicin in aqueous solution by complexation with ?-cyclodextrin," Journal of Functional Foods, vol. 40, pp. 700-706, Jan 2018. DOI: 10.1016/j.jff.2017.12.021.

Wilkins-Diehr, N., Zentner, M., Pierce, M., Dahan, M., Lawrence, K., Hayden, L. and Mullinix, N., "The science gateways community institute at two years," ACM International Conference Proceeding Series, Jan 2018.

Barsallo Yi, E., Maji, A. and Bagchi, S., "How reliable is my wearable: A fuzz Testing-Based study," Proceedings - 48th Annual IEEE/IFIP International Conference on Dependable Systems and Networks, DSN 2018, pp. 410-417, Jan 2018.

Catlin, A.C., Hewanadungodage, C., Pujol, S., Laughery, L., Sim, C., Puranam, A. and Bejarano, A., "A Cyberplatform for Sharing Scientific Research Data at DataCenterHub," Computing in Science and Engineering, vol. 20, no. 3, pp. 49-70, Jan 2018. DOI: 10.1109/MCSE.2017.3301213.

Chotiwan, N., Andre, B.G., Sanchez-Vargas, I., Islam, M.N., Grabowski, J.M., Hopf-Jannasch, A., Gough, E., Nakayasu, E., Blair, C.D., Belisle, J.T., Hill, C.A., Kuhn, R.J. and Perera, R., "Dynamic remodeling of lipids coincides with dengue virus replication in the midgut of Aedes aegypti mosquitoes," PLoS Pathogens, vol. 14, no. 2, Jan 2018. DOI: 10.1371/journal.ppat.1006853.

Villoria, N.B., Elliott, J., Müller, C., Shin, J., Zhao, L. and Song, C., "Web-based access, aggregation, and visualization of future climate projections with emphasis on agricultural assessments," SoftwareX, vol. 7, pp. 15-22, Jan 2018. DOI: 10.1016/j.softx.2017.11.004.

Grant, R.H., Smith, S.D., Harrell, S.L., Younts, A. and Smith, P., "Windows-based Workflows on Linux-based Beowulf Clusters," Proceedings of the Practice and Experience on Advanced Research Computing - PEARC '18 (New York, New York, USA, 2018), New York, NY, USA, pp. 1-5, Jan 2018.

Biehl, L., Zhao, L., Ellis, C., Kalyanam, R., Campbell, R. and Song, C., "Introducing Research Concepts to Middle School Students via a Geospatial Science Gateway," Proceedings of the Practice and Experience on Advanced Research Computing - PEARC '18 (New York, New York, USA, 2018), New York, NY, USA, pp. 1-5, Jan 2018.

Matei, S., Kalyanam, R., Zhao, L. and Song, C., "Social Media Modeling of Human Behavior in Natural Emergencies," Proceedings of the Practice and Experience on Advanced Research Computing - PEARC '18 (New York, New York, USA, 2018), New York, NY, USA, Jan 2018.

Harrell, S.L., Brazil, M., Younts, A., Dietz, D.T., Smith, P., Gough, E., Zhu, X. and Andino, G.K., "Mentoring Undergraduates into Cyber-Facilitator Roles," Proceedings of the Practice and Experience on Advanced Research Computing - PEARC '18 (New York, New York, USA, 2018), New York, NY, USA, pp. 1-7, Jan 2018.

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