Purdue University

Dobos, E., Micheli, E., Baumgardner, M.F., Biehl, L. and Helt, T., "Use of combined digital elevation model and satellite radiometric data for regional soil mapping," Geoderma, vol. 97, no. 3-4, pp. 367-391, 2000. DOI: 10.1016/S0016-7061(00)00046-X.

Biehl, L. and Landgrebe, D., "Effect of the number of samples used in a leave-one-out covariance estimator," Proceedings of SPIE - The International Society for Optical Engineering, pp. 370-374, 2000.

Houstis, E.N., Catlin, A.C., Rice, J.R., Verykios, V.S., Ramakrishnan, N. and Houstis, C.E., "PYTHIA-II: A Knowledge/Database System for Managing Performance Data and Recommending Scientific Software," ACM Transactions on Mathematical Software, vol. 26, no. 2, pp. 227-253, 2000. DOI: 10.1145/353474.353475.

Tomeh, M.M., Goasguen, S. and El-Ghazaly, S.M., "Time-domain optical response of an electrooptic modulator using FDTD," IEEE Transactions on Microwave Theory and Techniques, vol. 49, no. 12, pp. 2276-2281, 2001. DOI: 10.1109/22.971610.

Goasguen, S., Butt, A.R., Colby, K.D. and Lundstrorn, M.S., "Parallelization of the nanoscale device simulator nanoMOS-2.0 using a 100 nodes linux cluster," Proceedings of the IEEE Conference on Nanotechnology, pp. 409-412, 2002.

Aref, W.G. et al., "A distributed database server for continuous media," Proceedings - International Conference on Data Engineering, pp. 490-491, 2002.

Zhu, X., Aref, W.G., Fan, J., Catlin, A.C. and Elmagarmid, A.K., "Medical video mining for efficient database indexing, management and access," Proceedings - International Conference on Data Engineering, pp. 569-580, 2003.

Arns, L. and Cruz-Neira, C., "Effects of physical and virtual rotations and display device on users of an architectural walkthrough," Proceedings VRCAI 2004 - ACM SIGGRAPH International Conference on Virtual Reality Continuum and its Applications in Industry, pp. 104-111, 2004.

Erickson, B.J., Johannsen, C.J., Vorst, J.J. and Biehl, L.L., "Using remote sensing to assess stand loss and defoliation in maize," Photogrammetric Engineering and Remote Sensing, vol. 70, no. 6, pp. 717-722, 2004. DOI: 10.14358/PERS.70.6.717.

Arns, L.L. and Cerney, M.M., "The relationship between age and incidence of cybersickness among immersive environment users," Proceedings - IEEE Virtual Reality, pp. 267-268, 2005.

Madhavan, K.P.C., Arns, L.L. and Bertoline, G.R., "A distributed rendering environment for teaching animation and scientific visualization," IEEE Computer Graphics and Applications, vol. 25, no. 5, pp. 32-38, 2005.

Zhu, X., Elmagarmid, A.K., Xue, X., Wu, L. and Catlin, A.C., "InsightVideo: Toward hierarchical video content organization for efficient browsing, summarization and retrieval," IEEE Transactions on Multimedia, vol. 7, no. 4, pp. 648-666, 2005. DOI: 10.1109/TMM.2005.850977.

Moreland, J., Arns, L. and Meador, W.S., "Pre-rendered stereoscopic movies for commodity display systems," Proceedings of SPIE - The International Society for Optical Engineering, pp. 216-222, 2005.

Ouzzani, M., Aref, W.G., Bertino, E., Catlin, A.C., Clifton, C.W., Hon, W.-K., Elmagarmid, A.K., Ghafoor, A., Hambrusch, S.E., Prabhakar, S., Vitter, J.S. and Zhang, X., "The Indiana Center for Database Systems at Purdue University," SIGMOD Record, vol. 34, no. 2, pp. 53-58, 2005. DOI: 10.1145/1083784.1083795.

Klimeck, G., Korkusinski, M., Xu, H., Lee, S., Goasguen, S. and Saied, F., "Building and deploying community nanotechnology software tools on nanoHUB.org - Atomistic simulations of multimillion-atom quantum dot nanostructures," 2005 5th IEEE Conference on Nanotechnology, p. 75, 2005.

Korkusinski, M., Klimeck, G., Xu, H., Lee, S., Goasguen, S. and Saied, F., "Atomistic simulations in nanostructures composed of tens of millions of atoms: Importance of long-range strain effects in quantum dots," 2005 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2005 Technical Proceedings, pp. 534-537, 2005.

Ruth, P., Jiang, X., Xu, D. and Goasguen, S., "Virtual distributed environments in a shared infrastructure," Computer, vol. 38, no. 5, pp. 63-69, 2005. DOI: 10.1109/MC.2005.175.

Klimeck, G., Korkusinski, M., Haiying, X., Seungwon, L., Goasguen, S. and Saied, F., "Atomistic simulations of long-range strain and spatial asymmetry effects in multimillion-atom single and double quantum dot nanostructures," International Conference on Simulation of Semiconductor Processes and Devices, SISPAD, pp. 335-338, 2005.

Ruth, P., Rhee, J., Xu, D., Kennell, R. and Goasguen, S., "Autonomic live adaptation of virtual computational environments in a multi-domain infrastructure," Proceedings - 3rd International Conference on Autonomic Computing, ICAC 2006, pp. 5-14, 2006.

Xu, D., Ruth, P., Rhee, J., Kennell, R. and Goasguen, S., "Short paper: Autonomic adaptation of virtual distributed environments in a multi-domain infrastructure," Proceedings of the IEEE International Symposium on High Performance Distributed Computing, pp. 317-320, 2006.

Madhavan, K.P.C., Goasguen, S. and Klimeck, G., "The impact of the nanoscale vision on the future of learning and teaching," Proceedings of SPIE - The International Society for Optical Engineering, 2006.

Adamo-Villani, N., Carpenter, E. and Arns, L., "An immersive virtual environment for learning sign language mathematics," ACM SIGGRAPH 2006 Educators Program, SIGGRAPH ?06, 2006.

Knight, M.M. and Arns, L.L., "The relationship among age and other factors on incidence of cybersickness in immersive environment users," Proceedings - APGV 2006: Symposium on Applied Perception in Graphics and Visualization , p. 162, 2006.

Bene?, B., Dorjgotov, E., Arns, L. and Bertoline, G., "Granular material interactive manipulation: Touching sand with haptic feedback," 14th International Conference in Central Europe on Computer Graphics, Visualization and Computer Vision 2006, WSCG?2006 - In Co-operation with EUROGRAPHICS, Full Papers Proceedings, pp. 295-301, 2006.

Arns, L., Brisbin, M., Foldes, D. and Holland, J.D., "Virtual reality for ecosystem dynamics education," ACM SIGGRAPH 2006 Educators Program, SIGGRAPH ?06, 2006.

Carpenter, E., Kim, I., Arns, L., Dutta-Berman, M.J. and Madhavan, K., "Developing a 3D simulated bio-terror crises communication training module," Proceedings of the ACM Symposium on Virtual Reality Software and Technology, VRST , pp. 342-345, 2006.

Boardman, J.W., Clark, R.N., Mazer, A.S., Biehl, L.L., Kruse, F.A., Torson, J. and Staenz, K., "Development and implementation of software systems for imaging spectroscopy," International Geoscience and Remote Sensing Symposium (IGARSS), pp. 1969-1973, 2006.

Adamo-Villani, N., Carpenter, E. and Arns, L., "3D sign language mathematics in immersive environment," Proceedings of the 15th IASTED International Conference on Applied Simulation and Modelling, pp. 382-388, 2006.

Gough, E.S. and Kane, M.D., "Evaluating parallel computing systems in bioinformatics," Proceedings - Third International Conference on Information Technology: New Generations, ITNG 2006, pp. 233-238, 2006.

Glenn, N. and Braun, D., "Lean MIS can?t miss: Manufacturing information systems," InTech, vol. 51, no. 11, pp. 60-61, 2006.

Glenn, N. and Braun, D., "Investment in up-front time vital," InTech, vol. 53, no. 10, pp. 63-66, 2006.

Glenn, N. and Braun, D., "Making the integration process work," InTech, vol. 53, no. 9, p. 65, 2006.

Qiao, W., McLennan, M., Kennell, R., Ebert, D.S. and Klimeck, G., "Hub-based simulation and graphics hardware accelerated visualization for nanotechnology applications," IEEE Transactions on Visualization and Computer Graphics, vol. 12, no. 5, pp. 1061-1068, 2006. DOI: 10.1109/TVCG.2006.150.

Klimeck, G., McLennan, M., Mannino, M., Korkusinski, M., Heitzinger, C., Kennell, R. and Clark, S., "NEMO 3-D and nanoHUB: Bridging research and education," 6th IEEE Conference on Nanotechnology, IEEE-NANO 2006, pp. 441-444, 2006.

Gooding, S.L., Arns, L., Smith, P. and Tillotson, J., "Implementation of a Distributed Rendering Environment for the TeraGrid," Challenges of Large Applications in Distributed Environments, 2006 IEEE, pp. 13-21, 2006.

Ahmed, S., Klimeck, G., Kearney, D., McLennan, M. and Anantram, M.P., "Quantum simulations of dual gate mosfet devices: Building and deploying community nanotechnology software tools on nanohub.org," International Journal of High Speed Electronics and Systems, vol. 17, no. 3, pp. 485-494, 2007. DOI: 10.1142/S0129156407004679.

Bhargav-Spantzel, A., Woo, J. and Bertino, E., "Receipt management- transaction history based trust establishment," DIM'07 - Proceedings of the 2007 ACM Workshop on Digital Identity Management, pp. 82-91, 2007.

Kalyanam, R., Zhao, L., Park, T. and Goasguen, S., "A web service-enabled distributed workflow system for scientific data processing," Proceedings of the IEEE Computer Society Workshop on Future Trends of Distributed Computing Systems, pp. 7-14, 2007.

Ma, X., Li, Y., Bourgeois, M., Caffee, M., Elmore, D., Granger, D., Muzikar, P. and Smith, P., "WebCN: A web-based computation tool for in situ-produced cosmogenic nuclides," Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, vol. 259, no. 1, pp. 646-652, 2007.

Matei, S.A., Miller, C., Arns, L., Rauh, N., Hartman, C. and Bruno, R., "Visible past: Learning and discovering in real and virtual space and time," First Monday, vol. 12, no. 5, 2007. DOI: 10.5210/fm.v12i5.1836.

Biehl, L., "Eval-ware: Hyperspectral imaging," IEEE Signal Processing Magazine, vol. 24, no. 4, pp. 125-126, 2007. DOI: 10.1109/MSP.2007.4286573.

Schubert, P.J., Vitkin, L. and Braun, D., "Model-based development for event-driven applications using MATLAB: Audio playback case study," SAE Technical Papers, 2007. DOI: 10.4271/2007-01-0783.

Goasguen, S., "Grid architecture for scientific communities," IFIP International Federation for Information Processing, vol. 239, p. 397, 2007. DOI: 10.1007/978-0-387-73659-4_23.

Klimeck, G., Ahmed, S.S., Bae, H., Clark, S., Haley, B., Lee, S., Naumov, M., Ryu, H., Saied, F., Prada, M., Korkusinski, M., Boykin, T.B. and Rahman, R., "Atomistic simulation of realistically sized nanodevices using NEMO 3-D - Part I: Models and benchmarks," IEEE Transactions on Electron Devices, vol. 54, no. 9, pp. 2079-2089, 2007. DOI: 10.1109/TED.2007.902879.

Squicciarini, A.C., Bertino, E. and Goasguen, S., "Access control strategies for virtualized environments in grid computing systems," Proceedings of the IEEE Computer Society Workshop on Future Trends of Distributed Computing Systems, pp. 48-54, 2007.

Park, T. and Zhao, L., "Requirement analysis of the portal site serving distributed climate data for e-science," Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 450-456, 2007. DOI: 10.1007/978-3-540-73354-6_49.

Joseph E. Quansah, Gilbert L. Rochon, Kwamena K. Quagrainie, Steve Amisah, Mucai Muchiri, Charles Ngugi, "Remote Sensing Applications for Sustainable Aquaculture in Africa," IEEE International Geoscience and Remote Sensing Symposium, 2007.

Naumov, M., Lee, S., Haley, B., Bae, H., Clark, S., Rahman, R., Ryu, H., Saied, F. and Klimeck, G., "Eigenvalue solvers for atomistic simulations of electronic structures with NEMO-3D," Journal of Computational Electronics, vol. 7, no. 3, pp. 297-300, 2008. DOI: 10.1007/s10825-008-0223-5.

Sundaram, V., Zhao, L., Song, C.X., Benes, B., Veeramacheneni, R. and Kristof, P., "Real-time data delivery and remote visualization through multi-layer interfaces," Grid Computing Environments Workshop, GCE'08, pp. 1-10, 2008.

Wu, J.-H., Kalyanam, R. and Givan, R., "Stochastic enforced hill-climbing," ICAPS 2008 - Proceedings of the 18th International Conference on Automated Planning and Scheduling, pp. 396-403, 2008.

Woo, J., Bhagav-Spantzel, A., Squicciarini, A.C. and Bertino, E., "Verification of receipts from M-commerce transactions on NFC cellular phones," Proceedings - 10th IEEE Joint Conference on E-Commerce Technology and the 5th Enterprise Computing, E-Commerce and E-Services, CEC 2008 and EEE 2008, pp. 36-43, 2008.

Zeng, Y., Liu, D., Li, G., Yu, W., Huang, Z. and Song, C., "Seamless integration of data services between spatial information Grid and TeraGrid based on Broker-based data management model," Proceedings of SPIE - The International Society for Optical Engineering, 2008.

Smith, P.M., Hacker, T.J. and Song, C.X., "Implementing an industrial-strength academic cyberinfrastructure at Purdue University," IEEE International Parallel & Distributed Processing Symposium, pp. 1-7, 2008.

Dorjgotov, E., Bertoline, G.R., Arns, L., Pizlo, Z. and Dunlop, S.R., "Force amplitude perception in six orthogonal directions," Symposium on Haptics Interfaces for Virtual Environment and Teleoperator Systems 2008 - Proceedings, Haptics, pp. 121-127, 2008.

Everman, W.J., Medlin, C.R., Dirks Jr., R.D., Bauman, T.T. and Biehl, L., "The effect of postemergence herbicides on the spectral reflectance of corn," Weed Technology, vol. 22, no. 3, pp. 514-522, 2008. DOI: 10.1614/WT-07-021.1.

Kane, M.D., Sringer, J.A., Iannotti, N. V, Gough, E., Johns, S.M., Schlueter, S.D. and Sepúlveda, M.S., "Identification of development and tissue-specific gene expression in the fathead minnow Pimephales promelas, Rafinesque using computational and DNA microarray methods," Journal of Fish Biology, vol. 72, no. 9, pp. 2341-2353, 2008. DOI: 10.1111/j.1095-8649.2008.01889.x.

Heitzinger, C., Kennell, R., Klimeck, G., Mauser, N., McLennan, M. and Ringhofer, C., "Modeling and simulation of field-effect biosensors (BioFETs) and their deployment on the nanoHUB," Journal of Physics: Conference Series, 2008.

Squicciarini, A.C., Lee, W., Bertino, E. and Song, C.X., "A policy-based accountability tool for grid computing systems," Asia-Pacific Services Computing Conference, 2008, vol. APSCC'08. IEEE, p. 2008, 2008.

Catlett, C. et al., "TeraGrid: Analysis of organization, system architecture, and middleware enabling new types of applications," Advances in Parallel Computing, vol. 16, pp. 225-249, 2008.

Fanfani, A. et al., "CMS data and workflow management system," Astroparticle, Particle and Space Physics, Detectors and Medical Physics Applications - Proceedings of the 10th Conference, pp. 441-445, 2008.

Klimeck, G., McLennan, M., Lundstrom, M.S. and Adams III, G.B., "nanoHUB.org - online simulation and more materials for semiconductors and nanoelectronics in education and research," 2008 8th IEEE Conference on Nanotechnology, IEEE-NANO, pp. 401-404, 2008.

Lee, J.-W., Braun, D. and Song, C.X., "Rapid component-based development for Condor job submission," Grid Computing Environments Workshop (GCE?08), pp. 1-5, 2008.

Paci, F., Bertino, E., Kerr, S., Lint, A., Squicciarini, A. and Woo, J., "VeryIDX - A digital identity management system for pervasive computing environments," Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 268-279, 2008. DOI: 10.1007/978-3-540-87785-1_24.

Vinaitheerthan Sundaram, Yi Ru, Bedrich Benes, Lan Zhao, X. Carol Song, Taezoon Park, Gary Bertoline, Matthew Huber, "An Integrated System for Near Real-Time 3D Visualization of NEXRAD Level II Data Using TeraGrid," TeraGrid 2008 Conference, Las Vegas, NV, 2008.

Hsin-I Chang, Dev Niyogi, Fei Chen, Anil Kumar, X. Carol Song, Lan Zhao, Rao S. Govindaraju, Venkatesh Merwade, Ming Lei, Ken Scheeringa, "Developing a TeraGrid Based Land Surface Hydrology and Weather Modeling," TeraGrid 2008 Conference, Las Vegas, NV, 2008.

T. Hacker and G. Bertoline, "A Curriculum for Petascale Computing," TeraGrid 2008 Conference, Las Vegas, NV, 2008.

T. Hacker and P. Smith, "Building a Network Simulation Model of the TeraGrid Network," TeraGrid 2008 Conference, Las Vegas, NV, 2008.

Hangseng Bae, Steve Clark, Ben Haley, Ryu Hoon, Gerhard Klimeck, Sunhee Lee, Mathieu Luisier, Faisal Saied, "A Nano-Electronics Simulator for Petascale Computing: From NEMO to OMEN," TeraGrid 2008 Conference, Las Vegas, NV, 2008.

S. Lathrop, L. McGinnis, S. Brown, J. White, B. Armosky, T. Drummond, J. Ferguson, R. Gerber, T. J. Hacker, M.A. Leung, J.A. Rome, K. Traxler, J. Ziebarth, "HPC University," TeraGrid 2008 Conference, Las Vegas, NV, 2008.

Woo, J., Padma, J., Lee, J.-W., Braun, D. and Song, C.X., "Puffin: a fast and efficient web service-based condor job manager," The 5th Grid Computing Environments Workshop, p. 2, 2009.

Zhao, L., Wu, S., Veeramacheneni, R., Song, C.X. and Biehl, L., "Delivering real-time satellite data to a broader audience," The 5th Grid Computing Environments Workshop, p. 3, 2009.

Rochon, G., Wahab, M.A., El Afandi, G.S., Altay, G., Ersoy, O., Song, X.C., Zhao, L., Niyogi, D., Biehl, L., Grant, D. and others, "The Kamal Ewida Earth Observatory: A NATO supported real-time remote sensing receiving station being established in Egypt with HPC-enabled near-real-time data products for mitigation of environmental & public health disasters," Geoscience and Remote Sensing Symposium, 2009 IEEE International, IGARSS 2009, 2009.

Rochon, G.L., Araya, B., Biehl, L.L., Grant, D., Ersoy, O., Quansah, J., Altay, G., Wahab, M.M.A., El Afandi, G.S., El Ghazawi, T., Mohamed, M.A., Shokr, M. and Sithole, H., "Acquisition, analysis and distribution of real-time multi-sensor satellite data, in a high performance computing environment, for disaster mitigation applications: Case studies from the NATO science for peace funded kamal ewida earth observatory in Egypt, the electronic Geophysical Year (eGY)-Africa and the US Geological Survey supported AmericaView," Proceedings of IEEE Sensors, pp. 1020-1025, 2009.

Altay, G., Ersoy, O., Wahab, M.A., Afandi, G.E., Shokr, M., Ghazawi, T.E., Mohamed, M.A., Eleithy, B., El-Magd, I.A., Biehl, L., Grant, D., Rochon, G. and Fall, S., "Deployment of real-time satellite remote sensing infrastructure to support disaster mitigation: A NATO science for peace collaboration project with research universities in Turkey, Egypt and the USA," RAST 2009 - Proceedings of 4th International Conference on Recent Advances Space Technologies, pp. 18-22, 2009.

Paci, F., Bertino, E., Kerr, S., Squicciarini, A. and Woo, J., "An Overview of veryIDX - A privacy-preserving digital identity management system for mobile devices," Journal of Software, vol. 4, no. 7, pp. 696-706, 2009.

Kuriyan, K., Catlin, A.C. and Reklaitis, G. V, "pharmaHUB: Building a virtual organization for pharmaceutical engineering and science," Journal of Pharmaceutical Innovation, vol. 4, no. 2, pp. 81-89, 2009. DOI: 10.1007/s12247-009-9061-7.

Paci, F., Shang, N., Kerr, S., Steuer, K., Woo, J. and Bertino, E., "Privacy-preserving management of transactions' receipts for mobile environments," ACM International Conference Proceeding Series, pp. 73-84, 2009.

Hu, F. and Evans, J.J., "Power and environment aware control of Beowulf clusters," Cluster Computing, vol. 12, no. 3, pp. 299-308, 2009. DOI: 10.1007/s10586-009-0085-z.

Govindaraju, R.S., Engel, B., Ebert, D., Fossum, B., Huber, M., Jafvert, C., Kumar, S., Merwade, V., Niyogi, D., L. Oliver S. Prabhakar, G.R., Song, X.C. and Zhao, L., "Vision of cyberinfrastructure for end-to-end environmental explorations (C4E4)," J, vol. Hydrologic Engineering. 14, no. 1, pp. 53-64, 2009.

Haley, B.P., Lee, S., Luisier, M., Ryu, H., Saied, F., Clark, S., Bae, H. and Klimeck, G., "Advancing nanoelectronic device modeling through peta-scale computing and deployment on nanoHUB," Journal of Physics: Conference Series, 2009.

Maji, A.K., Hao, K., Sultana, S. and Bagchi, S., "Characterizing failures in mobile OSes: A case study with android and symbian," Proceedings - International Symposium on Software Reliability Engineering, ISSRE, pp. 249-258, 2010.

Shirke, K., Springer, J.A., Gough, E.S., Roumani, A., Riley, C.P. and Buck, C., "A case study in clinical data management for cancer proteomics," 19th International Conference on Software Engineering and Data Engineering 2010, SEDE 2010, pp. 301-306, 2010.

Riley, C.P., Gough, E.S., He, J., Jandhyala, S.S., Kennedy, B., Orcun, S., Ouzzani, M., Buck, C., Roumani, A.M. and Zhang, X., "The proteome discovery pipeline - a data analysis pipeline for mass spectrometry-based differential proteomics discovery," Open Proteomics Journal, vol. 3, pp. 8-19, 2010.

Zhao, L., Lee, W., Song, C.X., Huber, M. and Goldner, A., "Bringing high performance climate modeling into the classroom," Proceedings of the 2010 TeraGrid Conference, p. 24, 2010.

Dunston, P.S., Arns, L.L. and McGlothlin, J.D., "Virtual reality mock-ups for healthcare facility design and a model for technology hub collaboration," Journal of Building Performance Simulation, vol. 3, no. 3, pp. 185-195, 2010. DOI: 10.1080/19401490903580742.

Popescu, V., Rosen, P., Arns, L., Tricoche, X., Wyman, C. and Hoffmann, C.M., "The general pinhole camera: Effective and efficient nonuniform sampling for visualization," IEEE Transactions on Visualization and Computer Graphics, vol. 16, no. 5, pp. 777-790, 2010. DOI: 10.1109/TVCG.2010.22.

McLennan, M. and Kennell, R., "HUBzero: a platform for dissemination and collaboration in computational science and engineering," Computing in Science & Engineering, vol. 12, no. 2, pp. 48-53, 2010.

Shan, J., Hussain, E., Kim, K. and Biehl, L., "Flood mapping with satellite images and its web service," Photogrammetric Engineering and Remote Sensing, vol. 76, no. 2, pp. 102-105, 2010.

Braun, D. and Neumeister, N., "A Web portal for CMS Grid job submission and management," Journal of Physics: Conference Series, 2010.

Rochon, G.L., Niyogi, D., Fall, S., Quansah, J.E., Biehl, L., Araya, B., Maringanti, C., Valcarcel, A.T., Rakotomalala, L., Rochon, H.S., Mbongo, B.H. and Thiam, T., "Best management practices for corporate, academic and governmental transfer of sustainable technologies to developing countries," Clean Technologies and Environmental Policy, vol. 12, no. 1, pp. 19-30, 2010. DOI: 10.1007/s10098-009-0218-3.

Stewart, C.A. et al., "Implementation, performance, and science results from a 30.7 TFLOPS IBM BladeCenter cluster," Concurrency Computation Practice and Experience, vol. 22, no. 2, pp. 157-174, 2010. DOI: 10.1002/cpe.1539.

Carlyle, A.G., Harrell, S.L. and Smith, P.M., "Cost-Effective HPC: the community or the cloud?," Proceedings of the 2010 IEEE Second International Conference on Cloud Computing Technology and Science (CloudCom), pp. 169-176, 2010.

Kumar, S., Merwade, V., Lee, W., Zhao, L. and Song, C., "Hydroclimatological impact of century-long drainage in midwestern United States: CCSM sensitivity experiments," Journal of Geophysical Research: Atmospheres (1984-2012), vol. 115, no. D14, 2010.

Zhao, L., Song, C.X., Lee, J., Kim, J.R., Feng, W., Merwade, V. and Villoria, N., "Bring integrated GIS data and modeling capabilities into HUBzero platform," ACM SIGSPATIAL Second International Workshop on High Performance and Distributed Geographic Information Systems, pp. 30-33, 2011.

Harrell, S.L., Smith, P.M., Smith, D., Hoefler, T., Labutina, A.A. and Overmyer, T., "Methods of creating student cluster competition teams," Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, p. 50, 2011.

Zhao, L., Song, C.X., Thompson, C.S., Zhang, H., Lakshminarayanan, M., DeLuca, C., Murphy, S., Saint, K., Middleton, D., Wilhelmi, N. and others, "Developing an integrated end-to-end TeraGrid climate modeling environment," 2011 TeraGrid Conference: Extreme Digital Discovery, 2011.

Lee, H., Zhao, L., Bowen, G.J., Miller, C.C., Kalangi, A., Zhang, T. and West, J.B., "Enabling online geospatial isotopic model development and analysis," Proceedings of the TeraGrid 2011 Conference: Extreme Digital Discovery, TG'11, 2011.

Wu, J.-H., Kalyanam, R. and Givan, R., "Stochastic enforced hill-climbing," Journal of Artificial Intelligence Research, vol. 42, pp. 815-850, 2011.

Andino, G.K. and Hunt, G.J., "A scientific note on a new assay to measure honeybee mite-grooming behavior," Apidologie, vol. 42, no. 4, pp. 481-484, 2011. DOI: 10.1007/s13592-011-0004-1.

McLennan, M., "Managing data within the HUBzeroTM platform," OMICS A Journal of Integrative Biology, vol. 15, no. 4, pp. 247-249, 2011. DOI: 10.1089/omi.2011.0018.

Smith, A., Balazinska, M., Baru, C., Gomelsky, M., McLennan, M., Rose, L., Smith, B., Stewart, E. and Kolker, E., "Biology and data-intensive scientific discovery in the beginning of the 21st century," OMICS A Journal of Integrative Biology, vol. 15, no. 4, pp. 209-212, 2011. DOI: 10.1089/omi.2011.0006.

Joseph, N., Whittinghill, D.M., Howell, K.C. and Braun, D.W., "Work-in-progress stereoscopic visualization as a tool for teaching astronomy concepts," ASEE Annual Conference and Exposition, Conference Proceedings, 2011.

Srivastava, I., Fisher, T.S., Fernando, S., Catlin, A.C., Gupta, P. and Rao, P.S., "Online thermal properties database for structure-property correlated materials," ASME 2011 International Mechanical Engineering Congress and Exposition, IMECE 2011, pp. 1243-1244, 2011.

Zentner, L.K., Clark, S.M., Madhavan, K.P.C., Shivarajapura, S., Farnsworth, V. and Klimeck, G., "Automated grid probe system to improve end-to-end grid reliability for a science gateway," Proceedings of the TeraGrid 2011 Conference: Extreme Digital Discovery, TG'11, 2011.

Ruth, P., Rhee, J., Xu, D., Goasguen, S. and Kennell, R., "Autonomic live adaptation of virtual networked environments in a multidomain infrastructure," Journal of Internet Services and Applications, vol. 2, no. 2, pp. 141-154, 2011. DOI: 10.1007/s13174-011-0031-1.

Klimeck, G., Adams Iii, G.B., Madhavan, K.P.C., Denny, N., Zentner, M.G., Shivarajapura, S., Zentner, L.K. and Beaudoin, D.L., "Social networks of researchers and educators on nanoHUB.org," Proceedings - 11th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, CCGrid 2011, pp. 560-565, 2011.

Hacker, T.J., Eigenmann, R., Bagchi, S., Irfanoglu, A., Pujol, S., Catlin, A. and Rathje, E., "The NEEShub Cyberinfrastructure for Earthquake Engineering," Computing in Science Engineering, vol. 13, no. 4, pp. 67-78, 2011. DOI: 10.1109/MCSE.2011.70.

Zentner, L.K., Clark, S.M., Smith, P.M., Shivarajapura, S., Farnsworth, V., Madhavan, K.P.C. and Klimeck, G., "Practical considerations in cloud utilization for the science gateway nanoHUB.org," 2011 Fourth IEEE International Conference on Utility and Cloud Computing (UCC), 2011.

Zhao, Z., Woo, J. and Braun, D., "Google web toolkit for OGCE gadget based architecture," ACM Workshop on Gateway Computing Environments (OGCE), pp. 37-42, 2011.

Maji, A.K. and Bagchi, S., "V-CAPS: A confidentiality and anonymity preserving routing protocol for content-based publish-subscribe networks," Lecture Notes of the Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering, vol. 96 LNICST, pp. 281-302, 2012. DOI: 10.1007/978-3-642-31909-9_16.

Dadarlat, V.M., Gorenstein, L.A. and Post, C.B., "Prediction of protein relative enthalpic stability from molecular dynamics simulations of the folded and unfolded states," Biophysical Journal, vol. 103, no. 8, pp. 1762-1773, 2012. DOI: 10.1016/j.bpj.2012.08.048.

Maji, A.K., Arshad, F.A., Bagchi, S. and Rellermeyer, J.S., "An empirical study of the robustness of Inter-component Communication in Android," Proceedings of the International Conference on Dependable Systems and Networks, 2012.

Merwade, V., Feng, W., Zhao, L. and Song, C.X., "WaterHUB: a resource for students and educators for learning hydrology," The 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond, 2012.

Bowen, G.J., West, J.B., Zhao, L., Takahashi, G., Miller, C. and Zhang, T., "Cyberinfrastructure for isotope analysis and modeling," Eos, vol. 93, no. 19, pp. 185-187, 2012. DOI: 10.1029/2012EO190002.

Krupke, C.H., Hunt, G.J., Eitzer, B.D., Andino, G. and Given, K., "Multiple routes of pesticide exposure for honey bees living near agricultural fields," PLoS ONE, vol. 7, no. 1, 2012. DOI: 10.1371/journal.pone.0029268.

Tayyebi, A., Pekin, B.K., Pijanowski, B.C., Plourde, J.D., Doucette, J.S. and Braun, D., "Hierarchical modeling of urban growth across the conterminous USA: Developing meso-scale quantity drivers for the Land Transformation Model," Journal of Land Use Science, vol. 8, no. 4, pp. 422-442, 2013. DOI: 10.1080/1747423X.2012.675364.

Farnsworth, V.A., Lundstrom, M.S., Datta, S., Reifenberger, R., Raman, A., Fisher, T., Strachan, A., McLennan, M., Shivarajapura, S., Zentner, L.K., Madhavan, K. and Klimeck, G., "NanoHUB-U: A science gateway ventures into structured online education," Proceedings of the IEEE Conference on Nanotechnology, pp. 217-220, 2013.

Mallya, G., Zhao, L., Song, C.X., Niyogi, D. and Govindaraju, R.S., "2012 Midwest Drought in the United States," Journal of Hydrologic Engineering, vol. 8, no. 7, pp. 737-745, 2013. DOI: 10.1061/(ASCE)HE.1943-5584.0000786.

Madhavan, K., Zentner, M. and Klimeck, G., "Learning and research in the cloud," Nature Nanotechnology, vol. 8, no. 11, pp. 786-789, 2013. DOI: 10.1038/nnano.2013.231.

Madhavan, K., Zentner, L., Farnsworth, V., Samek, S., Zentner, M., Denny, N. and Klimeck, G., "NanoHUB.org: Cloud-based services for nanoscale modeling, simulation, and education," Nanotechnology Reviews, vol. 2, pp. 107-117, 2013.

Kalyanam, R., Zhao, L., Song, C.X., Wong, Y.L., Lee, J. and Villoria, N.B., "iData: a community geospatial data sharing environment to support data-driven science," The Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery (San Diego, CA, Jul. 2013), p. 41, 2013.

Kristof, P., Benes, B., Song, C.X. and Zhao, L., "A system for large-scale visualization of streaming Doppler data," IEEE International Conference on Big Data (Sillicon Valley, CA, Oct. 2013), pp. 33-40, 2013.

McCartney, G., Hacker, T. and Yang, B., "Empowering Faculty: A Campus Cyberinfrastructure Strategy for Research Communities," Educause Review, 2014.

Huang, J. et al., "Development of the International Thymic Malignancy Interest Group International Database: An unprecedented resource for the study of a rare group of tumors," Journal of Thoracic Oncology, vol. 9, no. 10, pp. 1573-1578, 2014. DOI: 10.1097/JTO.0000000000000269.

Witz, S., Buening, N.R., Catlin, A.C., Malloy, W., Kindsfater, J.L., Walroth, T., Washington, A. and Zink, R., "Using informatics to improve medical device safety and systems thinking," Biomedical Instrumentation and Technology, vol. 48, no. Horizons, pp. 38-43, 2014. DOI: 10.2345/0899-8205-48.s2.38.

Jeong, J.C., Jo, S., Wu, E.L., Qi, Y., Monje-Galvan, V., Yeom, M.S., Gorenstein, L., Chen, F., Klauda, J.B. and Im, W., "ST-analyzer: A web-based user interface for simulation trajectory analysis," Journal of Computational Chemistry, vol. 35, no. 12, pp. 957-963, 2014. DOI: 10.1002/jcc.23584.

Colby, K.D., Dietz, D.T., Smith, P.M. and Cumberland, D.D., "Self-service queue and user management in shared clusters," Proceedings of the First International Workshop on HPC User Support Tools, pp. 22-31, 2014.

Bowen, G.J., Liu, Z., Vander Zanden, H.B., Zhao, L. and Takahashi, G., "Geographic assignment with stable isotopes in IsoMAP," Methods in Ecology and Evolution, vol. 5, no. 3, pp. 201-206, 2014. DOI: 10.1111/2041-210X.12147.

Maji, A.K., Mitra, S., Zhou, B., Bagchi, S. and Verma, A., "Mitigating interference in cloud services by middleware reconfiguration," Proceedings of the 15th International Middleware Conference, Middleware 2014, pp. 277-288, 2014.

Pijanowski, B.C., Tayyebi, A., Doucette, J., Pekin, B.K., Braun, D. and Plourde, J., "A big data urban growth simulation at a national scale: Configuring the GIS and neural network based Land Transformation Model to run in a High Performance Computing (HPC) environment," Environmental Modelling and Software, vol. 51, pp. 250-268, 2014. DOI: 10.1016/j.envsoft.2013.09.015.

Vanderbilt, V.C., Daughtry, C.S.T. and Biehl, L.L., "Is there spectral variation in the polarized reflectance of leaves? ," Proceedings of SPIE - The International Society for Optical Engineering, 2014.

Andino, G.K., Gribskov, M., Hunt, G.J., Anderson, D. and Evans, J.D., "Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)," Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015, pp. 1715-1716, 2015.

Harrell, S., Nam, H.A., Vergara, V., Keville, K. and Kamalic, D., "Student Cluster Competition: A Multi-disciplinary Undergraduate HPC Educational Tool," EduHPC '15 Proceedings of the Workshop on Education for High-Performance Computing, 2015.

Catlin, A.C., Fernando, S., Gamage, R., Renner, L., Antwi, S., Tettey, J.K., Amisah, K.A., Kyriakides, T., Cong, X., Reynolds, N.R. and Paintsil, E., "Sankofa pediatric HIV disclosure intervention cyber data management: Building capacity in a resource-limited setting and ensuring data quality," AIDS Care - Psychological and Socio-Medical Aspects of AIDS/HIV, vol. 27, pp. 99-107, 2015. DOI: 10.1080/09540121.2015.1023246.

Maji, A.K., Mitra, S. and Bagchi, S., "ICE: An integrated configuration engine for interference mitigation in cloud services," Proceedings - IEEE International Conference on Autonomic Computing, ICAC 2015, pp. 91-100, 2015.

Prokopy, L.S. et al., "Using a team survey to improve team communication for enhanced delivery of agro-climate decision support tools," Agricultural Systems, vol. 138, pp. 31-37, 2015.

Reynolds, N.R., Ofori-Atta, A., Lartey, M., Renner, L., Antwi, S., Enimil, A., Catlin, A.C., Fernando, S., Kyriakides, T.C. and Paintsil, E., "SANKOFA: A multisite collaboration on paediatric HIV disclosure in Ghana," AIDS, vol. 29, 2015. DOI: 10.1097/QAD.0000000000000725.

Catlin, A.C., Malloy, W.X., Arthur, K.J., Gaston, C., Young, J., Fernando, S. and Fernando, R., "Comparative analytics of infusion pump data across multiple hospital systems," American Journal of Health-System Pharmacy, vol. 72, no. 4, pp. 317-324, 2015. DOI: 10.2146/ajhp140424.

McLennan, M., Clark, S., Deelman, E., Rynge, M., Vahi, K., McKenna, F., Kearney, D. and Song, C., "HUBzero and Pegasus: integrating scientific workflows into science gateways," Concurrency and Computation: Practice and Experience, vol. 27, no. 2, pp. 328-343, 2015.

Lawrence, K.A., Wilkins-Diehr, N., Wernert, J.A., Pierce, M., Zentner, M. and Marru, S., "Who cares about science gateways? A large-scale survey of community use and needs," Proceedings of GCE 2014: 9th Gateway Computing Environments Workshop, held in conjunction with SC 2014: The International Conference for High Performance Computing, Networking, Storage and Analysis, pp. 1-4, 2015.

Thompson, C.S., Zhao, L., Clark, S.M., Barbone, P.E., Oberai, A., Song, C.X., Seidl, D.T. and Liu, T., "Bring the NLACE model online using XSEDE and HUBzero," Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, p. 36, 2015.

Arora, R., Chen, K., Gupta, M., Clark, S. and Song, C., "Leveraging DiaGrid hub for interactively generating and running parallel programs," Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, p. 44, 2015.

Hunt, M., Haley, B., McLennan, M., Koslowski, M., Murthy, J. and Strachan, A., "PUQ: A code for non-intrusive uncertainty propagation in computer simulations," Computer Physics Communications, vol. 194, pp. 97-107, 2015. DOI: 10.1016/j.cpc.2015.04.011.

Howison, J., Deelman, E., McLennan, M.J., Da Silva, R.F. and Herbsleb, J.D., "Understanding the scientific software ecosystem and its impact: Current and future measures," Research Evaluation, vol. 24, no. 4, pp. 454-470, 2015. DOI: 10.1093/reseval/rvv014.

Lawrence, K.A., Zentner, M., Wilkins-Diehr, N., Wernert, J.A., Pierce, M., Marru, S. and Michael, S., "Science gateways today and tomorrow: Positive perspectives of nearly 5000 members of the research community," Concurrency Computation, vol. 27, no. 16, pp. 4252-4268, 2015. DOI: 10.1002/cpe.3526.

Lyu, Y., Zhu, X., Xiang, N. and Narsimhan, G., "Molecular Dynamics Study of Pore Formation by Melittin in a 1,2-Dioleoyl-sn-glycero-3-phosphocholine and 1,2-Di(9Z-octadecenoyl)-sn-glycero-3-phospho-(1?-rac-glycerol) Mixed Lipid Bilayer," Industrial and Engineering Chemistry Research, vol. 54, no. 42, 2015. DOI: 10.1021/acs.iecr.5b01217.

Bacolla, A., Zhu, X., Chen, H., Howells, K., Cooper, D.N. and Vasquez, K.M., "Local DNA dynamics shape mutational patterns of mononucleotide repeats in human genomes," Nucleic Acids Research, vol. 43, no. 10, pp. 5065-5080, 2015. DOI: 10.1093/nar/gkv364.

Zhang, N., Zhang, P., Zhang, L., Zhu, X., Huang, L. and Deng, Y., "Performance examinations of multiple time-stepping algorithms on stampede supercomputer," ACM International Conference Proceeding Series, 2015.

Zentner, M.G., "In the flow: Evolving from utility based social medium to community peer," 2015.

Xiang, N., Lyu, Y., Zhu, X., Bhunia, A.K. and Narsimhan, G., "Methodology for identification of pore forming antimicrobial peptides from soy protein subunits ?-conglycinin and glycinin," Peptides, vol. 85, pp. 27-40, 2016. DOI: 10.1016/j.peptides.2016.09.004.

Thompson, C.S., Clark, S.M. and Song, X.C., "The XSEDE BLAST gateway: Leveraging campus development for the XSEDE community," ACM International Conference Proceeding Series, 2016.

Feng, T., Zhu, X. and Campanella, O., "Molecular modeling tools to characterize the structure and complexation behavior of carbohydrates," Current Opinion in Food Science, vol. 9, pp. 62-69, 2016. DOI: 10.1016/j.cofs.2016.08.003.

Andino, G.K., Gribskov, M., Anderson, D.L., Evans, J.D. and Hunt, G.J., "Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)," BMC Genomics, vol. 17, no. 1, 2016. DOI: 10.1186/s12864-016-3130-3.

Arthur, K.J., Catlin, A.C., Quebe, A. and Washington, A., "Changing smart pump vendors: Lessons learned," Hospital Pharmacy, vol. 51, no. 9, pp. 782-789, 2016. DOI: 10.1310/hpj5109-782.

Julian, S., Shuey, M. and Cook, S., "Containers in research: Initial experiences with lightweight infrastructure," ACM International Conference Proceeding Series, 2016.

Rajib, M.A., Merwade, V., Kim, I.L., Zhao, L., Song, C. and Zhe, S., "SWATShare--A web platform for collaborative research and education through online sharing, simulation and visualization of SWAT models," Environmental Modelling and Software, vol. 75, pp. 498-512, 2016.

Villoria, N.B., Zhao, L., Song, C.X. and ShinShin, J., "Rapid aggregation of global gridded crop model outputs to facilitate cross-disciplinary analysis of climate change impacts in agriculture," Environmental Modelling and Software, vol. 75, pp. 193-201, 2016.

Gesing, S., Hayden, L.B., Marru, S., Pierce, M.E., Dahan, M., Lawrence, K., Wilkins-Diehr, N. and Zentner, M., "Lightning talk: The science gateways community institute - Supporting communities to achieve sustainability for their science gateways," CEUR Workshop Proceedings, 2016.

Idaszak, R. et al., "Lightning talk: HydroShare - A case study in software engineering best practices and culture change for developing sustainable community software," CEUR Workshop Proceedings, 2016.

Pouchard, L., Zhang, B., Smith, P., Gasc, A. and Pijanowski, B., "Data Storage and Sharing for the Long Tail of Science," New York Scientific Data Summit (NYSDS), 2016.

Mitra, S., Javagal, S., Maji, A.K., Gamblin, T., Moody, A., Harrell, S. and Bagchi, S., "A Study of Failures in Community Clusters: The Case of Conte," 2016 IEEE International Symposium on Software Reliability Engineering Workshops (ISSREW), pp. 189-196, 2016.

Korst, R.J., Fernando, S., Catlin, A.C., Rutledge, J.R., Girard, N., Huang, J. and Detterbeck, F., "Positron Emission Tomography in Thymic Tumors: Analysis Using a Prospective Research Database," Annals of Thoracic Surgery, vol. 104, no. 6, pp. 1815-1820, 2017. DOI: 10.1016/j.athoracsur.2017.06.053.

Gesing, S., Zentner, M., Casavan, J., Hillery, B., Vorvoreanu, M., Heiland, R., Marru, S., Pierce, M., Mullinix, N. and Maron, N., "Science gateways incubator: Software sustainability meets community needs," Proceedings - 13th IEEE International Conference on eScience, eScience 2017, pp. 477-485, 2017.

Akin, D. et al., "Linux clusters institute workshops: Building the HPC and research computing systems professionals workforce," Proceedings of HPCSYSPROS 2017: HPC Systems Professionals Workshop, Held in conjunction with SC 2017: The International Conference for High Performance Computing, Networking, Storage and Analysis, 2017.

Kalyanam, R. and Yang, B., "Try-CybSI: An extensible cybersecurity learning and demonstration platform," SIGITE 2017 - Proceedings of the 18th Annual Conference on Information Technology Education, pp. 41-46, 2017.

Kalyanam, R., Campbell, R., Kearney, D., Delgass, L., Biehl, L., Zhao, L., Ellis, C. and Song, C., "Cloud-enabling a collaborative research platform: The gabbs story," ACM International Conference Proceeding Series, 2017.

Andino, G.K., Brazil, M., Gribskov, M. and Smith, P., "Advancing the representation of women in HPC at Purdue University," ACM International Conference Proceeding Series, 2017.

Niyogi, D., Jacobs, E.M., Liu, X., Kumar, A., Biehl, L. and Raob, P.S.C., "Assessment of a long-term high-resolution hydroclimatic dataset for the U," S, vol. Midwest. Earth Interactions. 21, no. 4, 2017. DOI: 10.1175/EI-D-16-0022.1.

Müller, C. et al., "Global gridded crop model evaluation: Benchmarking, skills, deficiencies and implications," Geoscientific Model Development, vol. 10, no. 4, pp. 1403-1422, 2017. DOI: 10.5194/gmd-10-1403-2017.

Baldwin, M.E., Zhu, X., Smith, P.M., Harrell, S.L., Skeel, R. and Maji, A., "Scholar: A Campus HPC Resource to Enable Computational Literacy," Proceedings of EduHPC 2016: Workshop on Education for High-Performance Computing - Held in conjunction with SC 2016: The International Conference for High Performance Computing, Networking, Storage and Analysis, pp. 25-31, 2017.

Biehl, L.L., Zhao, L., Song, C.X. and Panza, C.G., "Cyberinfrastructure for the collaborative development of U2U decision support tools," Climate Risk Management, vol. 15, pp. 90-108, 2017. DOI: 10.1016/j.crm.2016.10.003.

Brunswicker, S., Matei, S.A., Zentner, M., Zentner, L. and Klimeck, G., "Creating impact in the digital space: digital practice dependency in communities of digital scientific innovations," Scientometrics, vol. 110, no. 1, pp. 417-442, 2017. DOI: 10.1007/s11192-016-2106-z.

Gesing, S., Dahan, M., Zentner, M., Wilkins-Diehr, N. and Lawrence, K., "The science gateways community institute: Going beyond borders," CEUR Workshop Proceedings, 2017.

Angel, J.R., Widhalm, M., Todey, D., Massey, R. and Biehl, L., "The U2U Corn Growing Degree Day tool: Tracking corn growth across the US Corn Belt," Climate Risk Management, vol. 15, pp. 73-81, 2017. DOI: 10.1016/j.crm.2016.10.002.

Xiang, N., Lyu, Y., Zhu, X., Bhunia, A.K. and Narsimhan, G., "Effect of physicochemical properties of peptides from soy protein on their antimicrobial activity," Peptides, vol. 94, pp. 10-18, 2017. DOI: 10.1016/j.peptides.2017.05.010.

Feng, T., Wang, K., Liu, F., Ye, R., Zhu, X., Zhuang, H. and Xu, Z., "Structural characterization and bioavailability of ternary nanoparticles consisting of amylose, ?-linoleic acid and ?-lactoglobulin complexed with naringin," International Journal of Biological Macromolecules, vol. 99, pp. 365-374, 2017. DOI: 10.1016/j.ijbiomac.2017.03.005.

Lyu, Y., Xiang, N., Zhu, X. and Narsimhan, G., "Potential of mean force for insertion of antimicrobial peptide melittin into a pore in mixed DOPC/DOPG lipid bilayer by molecular dynamics simulation," Journal of Chemical Physics, vol. 146, no. 15, 2017. DOI: 10.1063/1.4979613.

Wu, X., Wei, P.-H., Zhu, X., Wirth, M.J., Bhunia, A. and Narsimhan, G., "Effect of immobilization on the antimicrobial activity of a cysteine-terminated antimicrobial Peptide Cecropin P1 tethered to silica nanoparticle against E. coli O157:H7 EDL933," Colloids and Surfaces B: Biointerfaces, vol. 156, pp. 305-312, 2017. DOI: 10.1016/j.colsurfb.2017.05.047.

Liu, X., Jacobs, E., Kumar, A., Biehl, L., Andresen, J. and Niyogi, D., "The Purdue Agro-climatic (PAC) dataset for the U.S. Corn Belt: Development and initial results," Climate Risk Management, vol. 15, pp. 61-72, 2017. DOI: 10.1016/j.crm.2016.10.005.

Zhao, L., Song, C.X., Kalyanam, R., Biehl, L., Campbell, R., Delgass, L., Kearney, D., Wan, W., Shin, J., Kim, I. and Ellis, C., "GABBS - Reusable Geospatial Data Analysis Building Blocks for Science Gateways," 9th International Workshop on Science Gateways (IWSG 2017), 2017.

Dietz, D.T., Gorenstein, L.A., Veldman, G.S. and Colby, K.D., "Shared Research Group Storage Solution with Integrated Access Management," Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact, New York, NY, USA, pp. 14:1-14:7, 2017.

Colby, K., Maji, A.K., Rahman, J. and Bottum, J., "Testpilot: A Flexible Framework for User-centric Testing of HPC Clusters," Proceedings of the Fourth International Workshop on HPC User Support Tools, New York, NY, USA, pp. 5:1-5:10, 2017.

Smith, P.M., St. John, J. and Harrell, S.L., "There and Back Again: A Case Study of Configuration Management of HPC," Proceedings of the HPC Systems Professionals Workshop, New York, NY, USA, pp. 5:1-5:7, 2017.

Zhang, M., Wang, J., Lyu, Y., Fitriyanti, M., Hou, H., Jin, Z., Zhu, X. and Narsimhan, G., "Understanding the antimicrobial activity of water soluble ?-cyclodextrin/alamethicin complex," Colloids and Surfaces B: Biointerfaces, vol. 172, pp. 451-458, 2018. DOI: 10.1016/j.colsurfb.2018.08.065.

Cheng, L., Feng, T., Zhang, B., Zhu, X., Hamaker, B., Zhang, H. and Campanella, O., "A molecular dynamics simulation study on the conformational stability of amylose-linoleic acid complex in water," Carbohydrate Polymers, vol. 196, pp. 56-65, 2018. DOI: 10.1016/j.carbpol.2018.04.102.

Baker, J.R., Gilbert, J., Paula, S., Zhu, X., Sakoff, J.A. and McCluskey, A., "Dichlorophenylacrylonitriles as AhR Ligands That Display Selective Breast Cancer Cytotoxicity in vitro," ChemMedChem, vol. 13, no. 14, pp. 1447-1458, 2018. DOI: 10.1002/cmdc.201800256.

Hou, H., Wang, S., Zhu, X., Li, Q., Fan, Y., Cheng, D. and Li, B., "A novel calcium-binding peptide from Antarctic krill protein hydrolysates and identification of binding sites of calcium-peptide complex," Food Chemistry, vol. 243, pp. 389-395, 2018. DOI: 10.1016/j.foodchem.2017.09.152.

Lyu, Y., Xiang, N., Mondal, J., Zhu, X. and Narsimhan, G., "Characterization of Interactions between Curcumin and Different Types of Lipid Bilayers by Molecular Dynamics Simulation," Journal of Physical Chemistry B, vol. 122, no. 8, pp. 2341-2354, 2018. DOI: 10.1021/acs.jpcb.7b10566.

Xiang, N., Lyu, Y., Zhu, X. and Narsimhan, G., "Investigation of the interaction of amyloid ? peptide (11-42) oligomers with a 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) membrane using molecular dynamics simulation," Physical Chemistry Chemical Physics, vol. 20, no. 10, pp. 6817-6829, 2018. DOI: 10.1039/c7cp07148e.

Zhang, M.-K., Lyu, Y., Zhu, X., Wang, J.-P., Jin, Z.-Y. and Narsimhan, G., "Enhanced solubility and antimicrobial activity of alamethicin in aqueous solution by complexation with ?-cyclodextrin," Journal of Functional Foods, vol. 40, pp. 700-706, 2018. DOI: 10.1016/j.jff.2017.12.021.

Wilkins-Diehr, N., Zentner, M., Pierce, M., Dahan, M., Lawrence, K., Hayden, L. and Mullinix, N., "The science gateways community institute at two years," ACM International Conference Proceeding Series, 2018.

Barsallo Yi, E., Maji, A. and Bagchi, S., "How reliable is my wearable: A fuzz Testing-Based study," Proceedings - 48th Annual IEEE/IFIP International Conference on Dependable Systems and Networks, DSN 2018, pp. 410-417, 2018.

Catlin, A.C., Hewanadungodage, C., Pujol, S., Laughery, L., Sim, C., Puranam, A. and Bejarano, A., "A Cyberplatform for Sharing Scientific Research Data at DataCenterHub," Computing in Science and Engineering, vol. 20, no. 3, pp. 49-70, 2018. DOI: 10.1109/MCSE.2017.3301213.

Chotiwan, N., Andre, B.G., Sanchez-Vargas, I., Islam, M.N., Grabowski, J.M., Hopf-Jannasch, A., Gough, E., Nakayasu, E., Blair, C.D., Belisle, J.T., Hill, C.A., Kuhn, R.J. and Perera, R., "Dynamic remodeling of lipids coincides with dengue virus replication in the midgut of Aedes aegypti mosquitoes," PLoS Pathogens, vol. 14, no. 2, 2018. DOI: 10.1371/journal.ppat.1006853.

Villoria, N.B., Elliott, J., Müller, C., Shin, J., Zhao, L. and Song, C., "Web-based access, aggregation, and visualization of future climate projections with emphasis on agricultural assessments," SoftwareX, vol. 7, pp. 15-22, 2018. DOI: 10.1016/j.softx.2017.11.004.

Grant, R.H., Smith, S.D., Harrell, S.L., Younts, A. and Smith, P., "Windows-based Workflows on Linux-based Beowulf Clusters," Proceedings of the Practice and Experience on Advanced Research Computing - PEARC '18 (New York, New York, USA, 2018), New York, NY, USA, pp. 1-5, 2018.

Biehl, L., Zhao, L., Ellis, C., Kalyanam, R., Campbell, R. and Song, C., "Introducing Research Concepts to Middle School Students via a Geospatial Science Gateway," Proceedings of the Practice and Experience on Advanced Research Computing - PEARC '18 (New York, New York, USA, 2018), New York, NY, USA, pp. 1-5, 2018.

Matei, S., Kalyanam, R., Zhao, L. and Song, C., "Social Media Modeling of Human Behavior in Natural Emergencies," Proceedings of the Practice and Experience on Advanced Research Computing - PEARC '18 (New York, New York, USA, 2018), New York, NY, USA, 2018.

Harrell, S.L., Brazil, M., Younts, A., Dietz, D.T., Smith, P., Gough, E., Zhu, X. and Andino, G.K., "Mentoring Undergraduates into Cyber-Facilitator Roles," Proceedings of the Practice and Experience on Advanced Research Computing - PEARC '18 (New York, New York, USA, 2018), New York, NY, USA, pp. 1-7, 2018.

Harrell, S. and Howard, A., "Hybrid HPC Cloud Strategies from the Student Cluster Competition," 2018 IEEE 11th International Conference on Cloud Computing (CLOUD), pp. 186-193, 2018.

Stirm, C., Zink, R., Gesing, S., Zentner, M. and Junk, D., "REMEDI central-expanding and sustaining a medical device community," Future Generation Computer Systems, vol. 101, pp. 372-380, 2019. DOI: 10.1016/j.future.2019.05.082.

Brewer, N., Kim, H., Li, C., Anderson, H., Lanum, J., Cheoh, J., Hillery, B. and Overmyer, T., "Student cluster competition 2018, team Ada Six of Purdue University: Reproducing Extreme Scale Multi-Physics Simulations of Tsunamigenic 2004 Sumatra Megathrust Earthquake on Intel Skylake architecture," Parallel Computing, vol. 90, 2019. DOI: 10.1016/j.parco.2019.102565.

Gesing, S., Dahan, M., Zentner, M., Wilkins-Diehr, N. and Lawrence, K., "The Science Gateways Community Institute: Collaborations and efforts on international scale," Future Generation Computer Systems, vol. 101, pp. 951-958, 2019. DOI: 10.1016/j.future.2019.07.024.

Monroe, W. et al., "Lightning Talks of EduHPC 2019," Proceedings of EduHPC 2019: Workshop on Education for High Performance Computing - Held in conjunction with SC 2019: The International Conference for High Performance Computing, Networking, Storage and Analysis, pp. 25-31, 2019.

Yang, B., Kalyanam, R., Willis, C., Lambert, M. and Kirkpatrick, C., "CHEESE: Cyber human ecosystem of engaged security education," SIGITE 2019 - Proceedings of the 20th Annual Conference on Information Technology Education, pp. 189-190, 2019.

Bejarano, A., Hewa Nadungodage, C., Wang, F., Catlin, A.C. and Hoag, S.W., "Decision Support for Excipient Risk Assessment in Pharmaceutical Manufacturing," AAPS PharmSciTech, vol. 20, no. 6, 2019. DOI: 10.1208/s12249-019-1440-x.

Thota, A., Weakley, L.M., Fulton, B., Cicada Brokaw Dennis, H.E., Huber, L., Michael, S., Snapp-Childs, W., Harrell, S.L., Younts, A., Dietz, D.T., Phillips, C. and Zhu, X., "Research computing desktops: Demystifying research computing for non-Linux users," ACM International Conference Proceeding Series, 2019.

Lentner, G., "Shared memory high throughput computing with Apache Arrow," ACM International Conference Proceeding Series, 2019.

Gesing, S., Zentner, M., Clark, S., Stirm, C. and Haley, B., "Hubzero®: Novel concepts applied to established computing infrastructures to address communities' needs," ACM International Conference Proceeding Series, 2019.

Catlin, A.C., Hewanadungodage, C. and Bejarano, A., "Lifecycle Support for Scientific Investigations: Integrating Data, Computing, and Workflows," Computing in Science and Engineering, vol. 21, no. 4, pp. 49-61, 2019. DOI: 10.1109/MCSE.2019.2901433.

Kalyanam, R., Zhao, L., Song, C., Biehl, L., Kearney, D., Kim, I.L., Shin, J., Villoria, N. and Merwade, V., "MyGeoHub—A sustainable and evolving geospatial science gateway," Future Generation Computer Systems, vol. 94, pp. 820-832, 2019. DOI: 10.1016/j.future.2018.02.005.

Thorlton, J. and Catlin, A.C., "Data Mining for Adverse Drug Events: Impact on Six Learning Styles," CIN - Computers Informatics Nursing, vol. 37, no. 5, pp. 250-259, 2019. DOI: 10.1097/CIN.0000000000000513.

Gesing, S., Lawrence, K., Dahan, M., Pierce, M.E., Wilkins-Diehr, N. and Zentner, M., "Science gateways: Sustainability via on-campus teams," Future Generation Computer Systems, vol. 94, pp. 97-102, 2019. DOI: 10.1016/j.future.2018.09.067.

Ofori-Atta, A., Reynolds, N.R., Antwi, S., Renner, L., Nichols, J.S., Lartey, M., Amissah, K., Tettey, J.K., Alhassan, A., Ofori, I.P., Catlin, A.C., Gan, G., Kyriakides, T.C. and Paintsil, E., "Prevalence and correlates of depression among caregivers of children living with HIV in Ghana: findings from the Sankofa pediatric disclosure study," AIDS Care - Psychological and Socio-Medical Aspects of AIDS/HIV, vol. 31, no. 3, pp. 283-292, 2019. DOI: 10.1080/09540121.2018.1537463.

Harrell, S.L., Kitson, J., Bird, R., Pennycook, S.J., Sewall, J., Jacobsen, D., Asanza, D.N., Hsu, A., Carrillo, H.C., Kim, H. and Robey, R., "Effective performance portability," Proceedings of P3HPC 2018: International Workshop on Performance, Portability and Productivity in HPC, Held in conjunction with SC 2018: The International Conference for High Performance Computing, Networking, Storage and Analysis, pp. 24-36, 2019.

Li, G., Zhao, J., Murray, V., Song, C. and Zhang, L., "Gap analysis on open data interconnectivity for disaster risk research," Geo-Spatial Information Science, vol. 22, no. 1, pp. 45-58, 2019. DOI: 10.1080/10095020.2018.1560056.

Nichols, J.S., Kyriakides, T.C., Antwi, S., Renner, L., Lartey, M., Seaneke, O.A., Obeng, R., Catlin, A.C., Gan, G., Reynolds, N.R. and Paintsil, E., "High prevalence of non-adherence to antiretroviral therapy among undisclosed HIV-infected children in Ghana," AIDS Care - Psychological and Socio-Medical Aspects of AIDS/HIV, vol. 31, no. 1, pp. 25-34, 2019. DOI: 10.1080/09540121.2018.1524113.

Koneru, J.K., Zhu, X. and Mondal, J., "Quantitative Assessment of the Conformational Heterogeneity in Amylose across Force Fields," Journal of Chemical Theory and Computation, vol. 15, no. 11, pp. 6203-6212, 2019. DOI: 10.1021/acs.jctc.9b00630.

Overton, J.C., Zhu, X. and Mosier, N.S., "Molecular dynamics simulations and experimental verification to determine mechanism of cosolvents on increased 5-hydroxymethylfurfural yield from glucose," ACS Sustainable Chemistry and Engineering, vol. 7, no. 15, pp. 12997-13003, 2019. DOI: 10.1021/acssuschemeng.9b02096.

Cheng, L., Zhu, X., Hamaker, B.R., Zhang, H. and Campanella, O.H., "Complexation process of amylose under different concentrations of linoleic acid using molecular dynamics simulation," Carbohydrate Polymers, vol. 216, pp. 157-166, 2019. DOI: 10.1016/j.carbpol.2019.04.013.

Sang, S., Chen, Y., Zhu, X., Narsimhan, G., Hu, Q., Jin, Z. and Xu, X., "Effect of egg yolk lipids on structure and properties of wheat starch in steamed bread," Journal of Cereal Science, vol. 86, pp. 77-85, 2019. DOI: 10.1016/j.jcs.2019.01.009.

Feng, T., Hu, Z., Song, S., Yao, L., Sun, M., Zhu, X. and Lu, J., "The antioxidant and tyrosinase inhibition properties of essential oil from the peel of Chinese: Torreya grandis Fort," RSC Advances, vol. 9, no. 72, pp. 42360-42366, 2019. DOI: 10.1039/c9ra06664k.

Hillery, E., Ward, M.D., Rickus, J., Younts, A., Smith, P. and Adams, E., "Undergraduate Data Science and Diversity at Purdue University," Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (Learning) (New York, NY, USA, 2019), pp. 88:1-88:6, 2019.

Trivedi, S., Featherstun, L., DeMien, N., Gunlach, C., Narayan, S., Sharp, J., Werts, B., Wu, L., Ellis, C., Gorenstein, L., Gough, E., Younts, A. and Zhu, X., "PULSAR: Deploying Network Monitoring and Intrusion Detection for the Science DMZ," Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (Learning) (New York, NY, USA, 2019), pp. 53:1-53:8, 2019.

Smith, P., Harrell, S.L., Younts, A. and Zhu, X., "Community Clusters or the Cloud: Continuing Cost Assessment of On-premises and Cloud HPC in Higher Education," Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (Learning) (New York, NY, USA, 2019), pp. 97:1-97:4, 2019.

Feng, T., Hu, Z., Wang, K., Zhu, X., Chen, D., Zhuang, H., Yao, L., Song, S., Wang, H. and Sun, M., "Emulsion-based delivery systems for curcumin: Encapsulation and interaction mechanism between debranched starch and curcumin," International Journal of Biological Macromolecules, vol. 161, pp. 746-754, 2020. DOI: 10.1016/j.ijbiomac.2020.06.088.

HewaNadungodage, C., Catlin, A.C., Bejarano, A., Clark, S., Wickramaarachchi, G., Fernando, S. and Desigavinayagam, P., "The DEEDS platform: Support for integrated data and computing across the research lifecycle," Future Generation Computer Systems, vol. 111, pp. 793-805, 2020. DOI: 10.1016/j.future.2019.10.031.

Yi, E.B., Zhang, H., Maji, A.K. and Bagchi, S., "Vulcan: A state-aware fuzzing tool for wear OS ecosystem," MobiSys 2020 - Proceedings of the 18th International Conference on Mobile Systems, Applications, and Services, pp. 480-481, 2020.

Yi, E.B., Zhang, H., Maji, A.K., Xu, K. and Bagchi, S., "Vulcan: Lessons on reliability of wearables through state-aware fuzzing," MobiSys 2020 - Proceedings of the 18th International Conference on Mobile Systems, Applications, and Services, pp. 391-403, 2020.

Paintsil, E., Kyriakides, T.C., Antwi, S., Renner, L., Nichols, J.S., Amissah, K., Kusah, J.T., Alhassan, A., Ofori, I.P., Catlin, A.C., Gan, G., Lartey, M. and Reynolds, N.R., "Clinic-Based Pediatric Disclosure Intervention Trial Improves Pediatric HIV Status Disclosure in Ghana," Journal of acquired immune deficiency syndromes (1999), vol. 84, no. 1, pp. 122-131, 2020. DOI: 10.1097/QAI.0000000000002316.

Sravan, N., Milisavljevic, D., Reynolds, J.M., Lentner, G. and Linvill, M., "Real-time, value-driven data augmentation in the era of lsst," Astrophysical Journal, vol. 893, no. 2, 2020. DOI: 10.3847/1538-4357/ab8128.

Betz, M., Gundlach, E., Hillery, E., Rickus, J. and Ward, M.D., "The next wave: We will all be data scientists," Statistical Analysis and Data Mining, 2020. DOI: 10.1002/sam.11476.