Hansen Cluster OS upgrade

May 19, 2014  8:00am – May 20, 2014  5:00pm

During the maintenance scheduled for May 19-20 the Hansen cluster will be upgraded to Red Hat Enterprise Linux, version 6.

Only those PBS jobs with walltimes short enough that they will finish prior to the beginning of this maintenance period are being scheduled for execution -- jobs with longer walltimes will be held in the input queue until the operating system upgrade has been completed.

Most applications compiled on Red Hat Linux version 5 are expected to continue to function without recompilation. However, some software modules provided on the cluster have been changed. Please update any scripts that refer to old versions of software.
Package Red Hat 5 version New Package Name New Red Hat 6 Version
autodesk 2011, 2012 2013
boost 1.39.0, 1.47.0 1.49.0
boost 1.49.0_intel-12.1 1.49.0_intel-
cgal 3.6 3.9
comsol 3.5a 4.3b
eman2 current eman 2.07
fftw 3.3.1_intel-12.1_openmpi-1.4.4 3.3.3_intel-
fluent 13 ansys 14
fluent 6.3.26 ansys 14
gcc 4.1.2, 4.4.0, 4.5.1 4.7.2
gdal 1.8.0, 1.8.1 1.10.0
geos 3.3.1 3.3.2
gmt 4.5.6-gcc4 4.5.9
gmp 5.0.1 5.1.3
gromacs 4.5.5_openmpi-1.6 4.6.1_openmpi-1.6.3_gcc-4.7.2
gsl 1.14 1.15
hdf5 1.8.5_gcc-4.5.1 1.8.7_gcc-4.7.2
lammps 28Oct12, 4Jul12 29Jul13
mpfr 2.4.1 3.1.0
mpfr 3.0.0 3.1.0
mpich2 1.4_intel-12.0.084 1.4.1p1_intel-
mpich2 1.4.1p1_intel-12.0.084 1.4.1p1_intel-
mpich2 1.4.1p1_intel-12.1 1.4.1p1_intel-
mpich2 1.4.1p1_intel-13.0.117 1.4.1p1_intel-
mvapich2 1.8_gcc-4.5.1 1.9_gcc-4.7.2
mvapich2 1.8_intel-12.0.084 1.9_intel-
mvapich2 1.8_intel-12.1 1.9_intel-
mvapich2 1.8_intel- 1.9_intel-
nco 3.9.2 4.2.3
nco 4.0.8 4.2.3
ncview 1.93g 2.1.2
netcdf 3.6.3_gcc-4.5.1 3.6.3_gcc-4.7.2
netcdf 4.0.1_gcc-4.5.1 4.1.1_gcc-4.7.2
netcdf 4.0.1_intel-12.0.084 4.1.1_13.1.1.163
netcdf 4.1.3_gcc-4.5.1 4.1.1_gcc-4.7.2
nwchem 6.1_intel-10.1.025_mpich2-1.4.1p1 6.3-src.2013-05-28
openmpi 1.4.4_gcc-4.4.0 1.6.3_gcc-4.7.2
openmpi 1.4.4_intel-12.1 1.6.3_intel-
openmpi 1.6.3_gcc-4.5.1 1.6.3_gcc-4.7.2
protobuf 2.4.1 2.5.0
python 2.7.3_intel-12.1 2.7.5_intel-
valgrind 3.7.0 3.8.1
xcrysden 1.4.1 1.5.53
To prepare your applications and workflow for the upgrade, a test queue will be available soon.

Originally posted: April 16, 2014

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