Software: Fastq_pair
Description
Fastq_pair is used to match up paired end fastq files quickly and efficiently.
Available Versions
| Unspecified: | 1.0 |
|---|
For more information, please check its website: https://biocontainers.pro/tools/fastq_pair and its home page on Github.
Commands
- fastq_pair
Module
You can load the modules by:
module load biocontainers
module load fastq_pair
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run Fastq_pair on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=fastq_pair
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers fastq_pair
fastq_pair seq_1.fastq seq_2.fastq