Software: Mauve
Description
Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion.
Available Versions
| Unspecified: | 2.4.0 |
|---|
For more information, please check its website: https://biocontainers.pro/tools/mauve and its home page: http://darlinglab.org/mauve/.
Commands
- mauveAligner
- progressiveMauve
Module
You can load the modules by:
module load biocontainers
module load mauve
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run Mauve on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mauve
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers mauve
mauveAligner seqs.fasta --output=mauveAligner_output
progressiveMauve --output=threeway.xmfa \
--output-guide-tree=threeway.tree \
--backbone-output=threeway.backbone genome1.gbk genome2.gbk genome3.gbk