Software: ncbi-table2asn
Description
table2asn is a command-line program that creates sequence records for submission to GenBank. It uses many of the same functions as Genome Workbench but is driven generally by data files, and the records it produces do not necessarily require additional manual editing before submission to GenBank.
Available Versions
| Unspecified: | 1.26.678 |
|---|
Docker hub: https://hub.docker.com/r/staphb/ncbi-table2asn
Home page: https://www.ncbi.nlm.nih.gov/genbank/table2asn/
Commands
- table2asn
Module
You can load the modules by:
module load biocontainers
module load ncbi-table2asn
Example job
Using
#!/bin/sh -las shebang in the slurm job script will cause the failure of some biocontainer modules. Please use#!/bin/bashinstead.
To run ncbi-table2asn on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=ncbi-table2asn
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers ncbi-table2asn