Purdue University

Szip is an implementation of the extended-Rice lossless compression algorithm.

LibTIFF - Tag Image File Format TIFF Library and Utilities.

Distributes the V8 JavaScript engine in binary and source forms in order to support fast builds of The Ruby Racer.

Xlib ? C Language X Interface is a reference guide to the low-level C language interface to the X Window System protocol. It is neither a tutorial nor a user?s guide to programming the X Window System. Rather, it provides a detailed description of each function in the library as well as a discussion of the related background information.

Libxml2 is the XML C parser and toolkit developed for the Gnome project but usable outside of the Gnome platform, it is free software available under the MIT License.

libXp - X Print Client Library.

Libxslt is the XSLT C library developed for the GNOME project. XSLT itself is a an XML language to define transformation for XML. Libxslt is based on libxml2 the XML C library developed for the GNOME project. It also implements most of the EXSLT set of processor-portable extensions functions and some of Saxons evaluate and expressions extensions.

Liftoff is an accurate GFF3/GTF lift over pipeline.

LiftoffTools is a toolkit to compare genes lifted between genome assemblies. Specifically it is designed to compare genes lifted over using Liftoff although it is also compatible with other lift-over tools such as UCSC liftOver as long as the feature IDs are the same.

Lima is the standard tool to identify barcode and primer sequences in PacBio single-molecule sequencing data.

LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Oxford Nanopore Technologies Ltd. It can be used to scaffold high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads, other draft genomes, etc). It is also used to scaffold contig pairs linked by ARCS/ARKS.

Lofreq is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data.

LongPhase is an ultra-fast program for simultaneously co-phasing SNPs and SVs by using Nanopore and PacBio long reads.

LongQC is a tool for the data quality control of the PacBio and ONT long reads.

Lra is a sequence alignment program that aligns long reads from single-molecule sequencing (SMS) instruments, or megabase-scale contigs from SMS assemblies.

LTRpred(ict): de novo annotation of young and intact retrotransposons.

LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.

Lumpy-sv is a general probabilistic framework for structural variant discovery.

Lyveset is a method of using hqSNPs to create a phylogeny, especially for outbreak investigations.

Macrel is a pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.