Purdue University

HyPo--a Hybrid Polisher-- utilises short as well as long reads within a single run to polish a long reads assembly of small and large genomes. It exploits unique genomic kmers to selectively polish segments of contigs using partial order alignment of selective read-segments.

Hypre is a library of high performance preconditioners that features parallel multigrid methods for both structured and unstructured grid problems.

Idba is a practical iterative De Bruijn Graph De Novo Assembler for sequence assembly in bioinfomatics.

IDL is a data analysis language that provides powerful, core visualization and analysis functionality, and capabilities that allow data analysts and developers to leverage IDL's power in multiple software environments.

IGV (Integrative Genomics Viewer) is a high-performance, easy-to-use, interactive tool for the visual exploration of genomic data.

ImageMagick is a software suite to create, edit, compose, or convert bitmap images.

Impute2 is a genotype imputation and haplotype phasing program.

Infernal (INFERence of RNA ALignment) is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called covariance models (CMs).

Instrain is a python program for analysis of co-occurring genome populations from metagenomes that allows highly accurate genome comparisons, analysis of coverage, microdiversity, and linkage, and sensitive SNP detection with gene localization and synonymous non-synonymous identification

Intarna is a general and fast approach to the prediction of RNA-RNA interactions incorporating both the accessibility of interacting sites as well as the existence of a user-definable seed interaction.

Intel Parallel Studio.

Intel MPI

Intel MPI Library is a multifabric message-passing library that implements the open-source MPICH specification. Use the library to create, maintain, and test advanced, complex applications that perform better on high-performance computing HPC clusters based on Intel processors.

icc, icpc, ifort, icx, icpx, ifx, and dpcpp.

Intel oneAPI Math Kernel Library Intel oneMKL; formerly Intel Math Kernel Library or Intel MKL, is a library of optimized math routines for science, engineering, and financial applications. Core math functions include BLAS, LAPACK, ScaLAPACK, sparse solvers, fast Fourier transforms, and vector math.

Intel oneAPI Threading Building Blocks oneTBB is a flexible performance library that simplifies the work of adding parallelism to complex applications across accelerated architectures, even if you are not a threading expert.

Intel's Math Kernel Library (MKL) provides highly optimized, threaded and vectorized functions to maximize performance on each processor family. It Utilises de-facto standard C and Fortran APIs for compatibility with BLAS, LAPACK and FFTW functions from other math libraries.

Users who have novel nucleotide or protein sequences that they wish to functionally characterise can use the software package InterProScan to run the scanning algorithms from the InterPro database in an integrated way

IQ-TREE is an efficient phylogenomic software by maximum likelihood.

IQ-TREE is an efficient phylogenomic software by maximum likelihood.