Purdue University

NVIDIA Optimized Deep Learning Framework, powered by Apache MXNet is a deep learning framework designed for both efficiency and flexibility. It allows you to mix the flavors of symbolic programming and imperative programming to maximize efficiency and productivity.

High-performance computational chemistry software.

GNU Octave is a high-level language, primarily intended for numerical computations. It provides a convenient command line interface for solving linear and nonlinear problems numerically, and for performing other numerical experiments using a language that is mostly compatible with Matlab. It may also be used as a batch-oriented language.

odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorithms that allow the use of such graphs in bioinformatic analyses.

The Open Fabrics Interfaces OFI is a framework focused on exporting fabric communication services to applications.

The OpenAI Gym: A toolkit for developing and comparing your reinforcement learning agents.

OpenBLAS is an open source implementation of the BLAS API with many hand-crafted optimizations for specific processor types.

OpenCV, Open source Computer Vision, is an open-source BSD-licensed library that includes several hundreds of computer vision algorithms. Written in optimized C/C++, the library can take advantage of multi-core processing.

OpenFOAM is leading software for computational fluid dynamics (CFD).

The free and open-source java implementation.

OpenMM is a high-performance toolkit for molecular simulation. It can be used as an application, a library, or a flexible programming environment. OpenMM includes extensive language bindings for Python, C, C++, and even Fortran. The code is open source and developed on GitHub, licensed under MIT and LGPL.

An open source Message Passing Interface implementation.

OrthoFinder: phylogenetic orthology inference for comparative genomics

Paml is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.

Panacota is a software providing tools for large scale bacterial comparative genomics.

Panaroo is an updated pipeline for pangenome investigation.

Pandaseq is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.

Pandora is a tool for bacterial genome analysis using a pangenome reference graph (PanRG). It allows gene presence/absence detection and genotyping of SNPs, indels and longer variants in one or a number of samples.

Pangolin is a software package for assigning SARS-CoV-2 genome sequences to global lineages.

Pangraph is a bioinformatic toolkit to align genome assemblies into pangenome graphs.