Regtools are tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context.

RELION for REgularized LIkelihood OptimizatioN implements an empirical Bayesian approach for analysis of electron cryo-microscopy Cryo-EM. Specifically it provides methods of refinement of singular or multiple 3D reconstructions as well as 2D class averages. RELION is an important tool in the study of living cells.

RepeatMakser is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

RepeatModeler is a de novo transposable element (TE) family identification and modeling package.

RepeatScout is a tool to discover repetitive substrings in DNA.

ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.

RevBayes -- Bayesian phylogenetic inference using probabilistic graphical models and an interactive language.

MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold

rmats2sashimiplot produces a sashimiplot visualization of rMATS output. rmats2sashimiplot can also produce plots using an annotation file and genomic coordinates. The plotting backend is MISO.

RNAIndel calls coding indels from tumor RNA-Seq data and classifies them as somatic, germline, and artifactual. RNAIndel supports GRCh38 and 37.

RNApeg is an RNA junction calling, correction, and quality-control package. RNAIndel supports GRCh38 and 37.

Rnaquast is a quality assessment tool for de novo transcriptome assemblies.

Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka) and calculates the pan genome.

HPCG is a HPC benchmark intended to better represent computational and data access patterns that closely match a broad set of scientific workloads. This container implements the HPCG benchmark on top of AMDs ROCm platform.

HPL, or High-Performance Linpack, is a benchmark which solves a uniformly random system of linear equations and reports floating-point execution rate. This container implements the HPL benchmark on top of AMDs ROCm platform.

ROCm Application for Reporting System Info.

RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data.

Rseqc is a package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.

RStudio is an integrated development environment (IDE) for the R statistical computation and graphics system.

This package installs Rstudio desktop from pre-compiled binaries available in the Rstudio website. The installer assumes that you are running on CentOS7/Redhat7/Fedora19. Please fix the download URL for other systems.