beast2
Link to section 'Description' of 'beast2' Description
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.
Link to section 'Versions' of 'beast2' Versions
- Anvil: 2.6.4
Link to section 'Commands' of 'beast2' Commands
- applauncher
- beast
- beauti
- densitree
- loganalyser
- logcombiner
- packagemanager
- treeannotator
Link to section 'Module' of 'beast2' Module
You can load the modules by:
module load beast2
Link to section 'Example job' of 'beast2' Example job
To run BEAST 2 on our clusters:
#!/bin/bash
#SBATCH -A myQueue
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 4
#SBATCH --job-name=beast2
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module load beast2
beast -threads 4 -prefix input input.xml